Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00466 ATGAAGATCCAGTGTGATGTGTGTCACAAAGAAGTGGCCTCCTTGTTCTGCCCGTCAGATGAAGCAGCTCTCTGCCATGCTTGTGATAGCAGCATCCACCGTGCCAACAAGCTCGCAGACAAACACAAACGCTTCTCTCTCCACCACCCCACCTCCAAAGGCACCACTCTCTGTGATATCTGTCATGTGAAGCGTGCTTATGTGTTTTGCAGAGAGGACAGAGCTCTACTTTGTAGACAATGTGACGTTTCCATTCATGGAGCCAACGAACATACCAAGACACACGACAGATTTCTTCTCACTGGAATAAAGCTTGGTGCCACCACCGAAGAAAAAAAAACAATAACAACCTCTCGTAATTCTAAATTAAATGCTCAAAGTTCACTCTCATACCAAAATATTGGTTCTTCTCGCACGGTAGGAGTAGTTTGTGACTCGAGTTCCGTTCCAACAAGCAGCAGCATATCTGAGTACTTGATTCAGACCATTCCCGGTTACTGCATGGAAGACCTTTTAGATGCTTCTTTTGCATCAAATGCTTTCTCTAAGGATTATGAGCAGCAATCAGCGTTTCAAAATCAAGATGATCAACTGCAATCTCAATTTACCAGTGCTTCGAATCTTTATCCTGAGATTGATTCTTTAGTTGGAGTTATGGAAATGCCAAAAGCAAAAGCTGGTGAAGGATACTCCAATTGGATTCATAATTATGACTACCCACCCTACAAAGTTCCCTCAATTACTCCTCCTTTAGTAAAAAGAAGTAAACGCTCTCGTTAA 780 0.4269 MKIQCDVCHKEVASLFCPSDEAALCHACDSSIHRANKLADKHKRFSLHHPTSKGTTLCDICHVKRAYVFCREDRALLCRQCDVSIHGANEHTKTHDRFLLTGIKLGATTEEKKTITTSRNSKLNAQSSLSYQNIGSSRTVGVVCDSSSVPTSSSISEYLIQTIPGYCMEDLLDASFASNAFSKDYEQQSAFQNQDDQLQSQFTSASNLYPEIDSLVGVMEMPKAKAGEGYSNWIHNYDYPPYKVPSITPPLVKRSKRSR 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00466 259 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Phco9g00466 259 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Phco9g00466 259 CDD Bbox1_BBX-like 5 47 - -
Phco9g00466 259 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Phco9g00466 259 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 203 - -
Phco9g00466 259 SMART bboxneu5 53 100 IPR000315 GO:0008270
Phco9g00466 259 SMART bboxneu5 4 47 IPR000315 GO:0008270
Phco9g00466 259 CDD Bbox1_BBX-like 57 100 - -
Phco9g00466 259 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Phco9g00466 259 Gene3D Classic Zinc Finger 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00466 Phco-Chr9 3378528 3379837 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Phco9g00466 zf-B_box 1.9e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00466 9 3378528 3379837 Phco9g00466 9 3378528 3379837 ECH
Phco9g00466 9 3378528 3379837 Phco9g00445 9 3211710 3213839 ECH
Phco9g00466 9 3378528 3379837 Phco8g00427 8 3881695 3883435 ECH
Phco9g00466 9 3378528 3379837 Phco4g00894 4 7045351 7046704 ECH