Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00445 ATGCGAACCCTTTGCGACGTTTGCGAGAGCGCCGCTGCCATTCTCTTCTGCGCCGCCGATGAGGCTGCTCTCTGCTTTGCTTGTGACCAAAAGATCCATATGTGTAACAAACTTGCTAGTAGACACATTCGGGTTGGTCTTGCTGACCCCACTGATGTTCCACGCTGTGACATATGTGAAAATGCGCCTGCTTTCTTTTACTGTGAGATAGATGGTAGTTCGCTGTGTCTGCAATGTGATATGATTGTGCATGTTGGTGGTAAAAGAACTCACGAAAGATATCTTCTATTGAGGCAAAGAGCTGAGTTTCCAGGAGATAAACCTGCCCAAATGGAAGAACTAGGGCTGCAACCACTGGATCAAAATGAATTTAGGAGGGATGAAAGTCAGTCCCTCAAGCTAAAAACAAGAGATACTCAGCAGAATCACAGTATCTTACCTGTTCCAAGACAAGAAAATAATATTGATGGTCATAGAAAAATGGATAAAAAGTTAATTGATCTCAACACCAGGCCATTGCGGTTAAATGGACCAACACCAAACAACCAGGAACAGGGTATGGATATTTTAAGAGGCAATAATCATGAATTTGCAAGCGTGCCACCAGTTGAATCCTACAAACAAGGGGCTGAGAAGCAATAA 642 0.4346 MRTLCDVCESAAAILFCAADEAALCFACDQKIHMCNKLASRHIRVGLADPTDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHERYLLLRQRAEFPGDKPAQMEELGLQPLDQNEFRRDESQSLKLKTRDTQQNHSILPVPRQENNIDGHRKMDKKLIDLNTRPLRLNGPTPNNQEQGMDILRGNNHEFASVPPVESYKQGAEKQ 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00445 213 FunFam B-box zinc finger protein 19 2 92 - -
Phco9g00445 213 MobiDBLite consensus disorder prediction 192 213 - -
Phco9g00445 213 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 169 - -
Phco9g00445 213 CDD Bbox1_BBX-like 56 96 - -
Phco9g00445 213 Pfam B-box zinc finger 53 92 IPR000315 GO:0008270
Phco9g00445 213 CDD Bbox1_BBX-like 4 47 - -
Phco9g00445 213 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Phco9g00445 213 SMART bboxneu5 1 47 IPR000315 GO:0008270
Phco9g00445 213 SMART bboxneu5 51 96 IPR000315 GO:0008270
Phco9g00445 213 Gene3D Classic Zinc Finger 2 95 - -
Phco9g00445 213 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00445 Phco-Chr9 3211710 3213839 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Phco9g00445 zf-B_box 3.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00445 9 3211710 3213839 Phco9g00445 9 3211710 3213839 ECH
Phco7g00321 7 2260811 2261918 Phco9g00445 9 3211710 3213839 ECH
Phco9g00466 9 3378528 3379837 Phco9g00445 9 3211710 3213839 ECH