Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00186 ATGTTTCCTCAAACACCAACTATCTCACTTTTCATTGTCCTCTCTTCACTAGTCTTATGTAATGGCTATTACATGGAGGAGCCACTTTATAAGACAAATTATAAACACTACCCTATGCATGATAGAAGATTCATGAAGAGAAGACATGAACATTTTGGTCTTATAACAAGGGGTAATAGAGTTACCCCTCTTTCTTATAGGCAGAGTGGAACAATTAATGTTGATGACTTCGGAGCCAAAGCAGATGGAAGAGATAATACCGAGGCATTTGGAAAGGCATGGAGTGAAGCATGTTCAAGAGGGGGTGTCCTTGTGGTACCTGAAAATAGGATCTATCGTCTTAAGCCAATCACATTTTCTGGTCCATGTCGACCCAACACTGCCTTTATGCTTTATGGTACAATCGAGGCATGGACTCAAATGTCGGCATACCAAGAAGATAGACAACACTGGATTATCTTTGATAGTGTTTCAAATTTCAGAGTTGGTGGTGGTGGCACATTCAATGGCAAAGGAAAAAACTGGTGGCAAAACTCTTGCAAAGCAACCACGAACCTTCCATGCAACGATGGACCAAGACCAAAGGCTGTGACTTTCTTTCAATGCAAAAATTTGGAAGTGAGAAACCTGATGTTCAAAGATGCACAGCAAATGCACGTAACCTTTGAAGGATGCTTCAATGTTATTGCTTCGAATCTGGTCATCAGAGCACCCGGGGACAGCCCCAACACTGATGGAATTCATGTCGCTGACACACAAAATATTGCCATAAGCAATAGTGATATTGGGACAGGTGATGATTGTATTTCGATAATAAGTGGGTCACAAAACGTTCGAGCAACAGATATCACCTGCGGGCCTGGACATGGAATAAGCATTGGTAGCTTGGGAGCAGATAACTCAGAAGCTGAAGTGTCCAATGTGGTAGTGAACAGAGCAACTTTAAAAGGAACCACTAATGGAGTGAGAATAAAGACTTGGCAGGGAGGCTCTGGTTATGCTAGAAACATCAAATTTTTGAACATAATGATGCAAAATGTGACAAATCCCATTATCATAGATCAATACTACTGTGACCAAGCTAAGGCATGTCAAGAGCAGAACTCAGCTGTGCAATTAAGCAATGTTTTATACCAAAACATAAGAGGAACGAGTGCCTCAGAAGTGGCTATCAAATTTGACTGCAGCAGAGCAGTCCCGTGCAGACAAATCTACCTGCAGGATGTGATTTTAGAGCCACAAGGCAGAGGTGGCACCATTGCTACATGTGCAAATGTTAGATATGTCAACAGAGGAAAGTTTTTTCCTCAATGCACTCCATGA 1323 0.418 MFPQTPTISLFIVLSSLVLCNGYYMEEPLYKTNYKHYPMHDRRFMKRRHEHFGLITRGNRVTPLSYRQSGTINVDDFGAKADGRDNTEAFGKAWSEACSRGGVLVVPENRIYRLKPITFSGPCRPNTAFMLYGTIEAWTQMSAYQEDRQHWIIFDSVSNFRVGGGGTFNGKGKNWWQNSCKATTNLPCNDGPRPKAVTFFQCKNLEVRNLMFKDAQQMHVTFEGCFNVIASNLVIRAPGDSPNTDGIHVADTQNIAISNSDIGTGDDCISIISGSQNVRATDITCGPGHGISIGSLGADNSEAEVSNVVVNRATLKGTTNGVRIKTWQGGSGYARNIKFLNIMMQNVTNPIIIDQYYCDQAKACQEQNSAVQLSNVLYQNIRGTSASEVAIKFDCSRAVPCRQIYLQDVILEPQGRGGTIATCANVRYVNRGKFFPQCTP 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00186 440 ProSitePatterns Polygalacturonase active site. 282 295 IPR000743 GO:0004650|GO:0005975
Phco9g00186 440 PANTHER - 71 426 - -
Phco9g00186 440 Pfam Glycosyl hydrolases family 28 104 427 IPR000743 GO:0004650|GO:0005975
Phco9g00186 440 FunFam Polygalacturonase QRT2 58 439 - -
Phco9g00186 440 Gene3D - 57 435 IPR012334 -
Phco9g00186 440 SUPERFAMILY Pectin lyase-like 65 439 IPR011050 -
Phco9g00186 440 SMART pbh1 334 355 IPR006626 -
Phco9g00186 440 SMART pbh1 252 273 IPR006626 -
Phco9g00186 440 SMART pbh1 305 326 IPR006626 -
Phco9g00186 440 SMART pbh1 225 251 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00186 Phco-Chr9 1220258 1222895 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00186 9 1220258 1222895 Phco9g00186 9 1220258 1222895 ECH
Phco9g00186 9 1220258 1222895 Phco10g00230 10 1973639 1977509 PCT