Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03172 ATGACGGACATCACTGATGACATAGCGGAGGAAATCTCCTTCCAAGACTTCGACGATGACTGTAATATGCTCGGAAGCCTTCTCAACGACATTTTGCAGAGAGAGGCAGGCCCAATCTTCGTTGACAAGCTTGAAAAAATTCGAGTCCTTGCTCAGAGTGCTTGTAATATGAGACTTGCGGGGATTGAAGACATGGCTGAGCTGGTAGAGAAGCAATTGGCTTCAGAGTTATCCAAGATGACATTAGAAGAAGCTCTAACATTAGCTCGTGCCTTCAGCCATCATCTTACTTTGATGGGTATTGCTGAAACTCACCACAGGGTTCGTAAAGGAGGAAACCGGGCTCTTATTGCAAAATCTTGTGATGACATATTTAACCAGCTGTTGCAAGATGGAGTTACTCCAGATGAACTTTATAACTCGGTTTGCAAGCAGGAGGTCGAAATTGTTCTTACAGCTCACCCCACCCAAATTAATCGTCGTACCTTGCAATACAAACACATTAAAATTGCTCATCTTTTGGATTATAATGATCGACCTGATCTTGGCCATGAAGATCGAGATATGTTGATTGAAGATATGGTGAGAGAGATAACTTCAATATGGCAGACAGATGAACTTAGGCGTGAAAAACCCACACCAGTCGATGAAGCCAGGGCCGGATTGAATATTGTGGAGCAATCACTCTGGAAAGCTGTTCCTCATTATTTACGTCGAGTTAGCAGCGCTTTAAGGAAGCACACAGGAAAAGCACTTCCATTGACTTGTACTCCGATAAAGTTTGGATCTTGGATGGGAGGTGATAGAGATGGAAATCCAAATGTGACAGCTAAGGTCTCAAAAGATGTTTCACTTCTGTCGAGATGGATGGCAATTGACCTCTACGTTCGGGAAGTGGATAGCCTGAAATTTGAGCTATCCATGAAACGGTGCAGCGATAAGTTGTCAAAATTGGCACAGGAAATTCTGGAAGAAGCTAATGATGAAGAGAATCACCGTGAGCTTTGGAATGAATCTAGGAGTGTAAGTCAATTGAAGCATTCTAATAAACAAGCTTCACCGCTTCCAACTAAACTTCCATCTGGAGCTCATTTACCGTCTTGTGCTGAAAAGGGTGGATCTGAGCATCCCAGACTCATGCCAGGAGCTGATTACAAGCAATTCAATCCCAAGGGTGGCGAGATTTCAAGTTCAACTGAGAGCAGTGGTGGCAGTCCCAATGTCCGTTCATCAGTACCAATTTCACCAAATTCCAGTGCTTCTTCATTAGTTTCAATGACACGCTCTCCTTCTTTCAACTCTAGTCAACAACTTCTTGCTCAGAGGAAATTGTTTGCAGAATCCCAGATAGGAAGGACCAGTTTCCATAGGCTTTTGGAGCCAAAGCTACCTCAGCTTCCTGGAATTGCTCCGTATAGAGTGGTCCTGGGAAATGTCAAAGATAAGCTTCTGAGAACTCGTAGACGGTTGGAGCTTCTTCTCGAGGATGGTCCATGTGAACATAATCCTATGAATTATTATGAAACAACAGATCAGCTCTTGGAACCTTTGCTCCTTTGCTATGAATCTTTGCAATCATGTGGATCTGGGGTGCTAGCTGATGGTCGACTTGCTGATCTGATTCGAAGAGTTACTACTTTTGGCATGGTGTTAATGAAGCTTGACTTGCGCCAGGAATCTGGCAGACATGCTGAAACGCTTGATGCCGTTACAAGGTATTTGGACTTGGGTACATACAGTGAGTGGGACGAAGAAAAAAAACTGAACTTCTTAACTAGAGAGCTGAAAGGGAAGAGACCACTGATTCCCCCTAGTATAGAGGTTGCTCCAGATGTTAGAGAAGTCTTGGACACGTTCCGAACTGCTGCTGAGTTAGGAAGCGATTCATTTGGTGCCTATGTGATCTCTATGGCCTCAAATGCCAGTGATGTTCTAGCAGTAGAGCTTTTGCAGAAGGATGCACGACTTGCTGTTAGTGGAGAGTTAGGAAGAGCTTGTCCAGGTGGAACGCTGCGAGTGGTTCCTCTATTTGAAACTGTAAAGGATCTGAGAGGAGCTGGTTCAGTTATCAGAAAGCTTTTGTCAATAGATTGGTACCGGCAACACATCCTTAAAAACCATAATGGGCATCAAGAGGTTATGGTTGGGTATTCTGATTCTGGTAAAGATGCTGGGCGTTTCACTGCTGCTTGGGAACTTTACAAGGCTCAAGAAGATGTTGTGGCTGCATGCAAGGAGTATGGTATTAAGGTTACTCTCTTCCATGGCCGTGGAGGGAGTATTGGCCGCGGTGGTGGCCCAACATATATGGCCATTCAGTCTCAACCACCCGGCTCTGTAATGGGAACCCTTCGTACAACTGAGCAAGGAGAGATGGTGCAGGCCAAGTTTGGGTTGCCACAAACAGCTGTTAGACAACTTGAGATATACACAACAGCTGTCTTACTTGCTACCCTTCGTCCTCCTCTTCCACCGCGTGAAGAAAAGTGGCGCAATTTGATGGAAGACATTTCAAATATCAGTTGCCAGTGTTACCGAAGTGTAGTGTACGAAAATCCAGAATTTCTGTCCTACTTCCATGAAGCCACACCTCAATCAGAGCTTGGCTTCCTCAACATCGGTAGCCGCCCCACAAGGCGAAAGAGCACCACTGGAATTGGCAACCTCCGTGCCATTCCCTGGGTGTTTGCATGGACTCAAACCAGGTTTGTTCTTCCAGCTTGGCTTGGAGTTGGAGCAGGTTTGAAAGGTGCTAGTGAGAAAGGACAAACTGAAGAGCTAAGGGCGATGTACAGAGAGTGGCCTTTCTTTCAAAGCACAATAGACTTGATTGAGATGGTTCTTGGAAAAGCAGACATTCCTATTGCCAAGCACTATGATGAAGTTCTTGTCTCTGAGAAAAGACAAAAACTTGGAAGTCAGCTAAGGGATGAGCTCATCCAAACTGGGAAGTTTGTGTTAGCTGTTAGTGGGCATGAGAAACCTCAGCAGAATAATAGGAGCTTAAGGAAACTGATTGAGAGTAGGCTTCCCTTCCTCAATCCCATGAACATGTTGCAGGTAGAGATTCTCAAGAGGCTAAGAAGTGATGATGACAACCTTAAAGCCAGAGATGCCTTGCTTATCACCATAAATGGCATTGCTGCTGGGATGAGGAACACTGGTTAA 3168 0.4492 MTDITDDIAEEISFQDFDDDCNMLGSLLNDILQREAGPIFVDKLEKIRVLAQSACNMRLAGIEDMAELVEKQLASELSKMTLEEALTLARAFSHHLTLMGIAETHHRVRKGGNRALIAKSCDDIFNQLLQDGVTPDELYNSVCKQEVEIVLTAHPTQINRRTLQYKHIKIAHLLDYNDRPDLGHEDRDMLIEDMVREITSIWQTDELRREKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSSALRKHTGKALPLTCTPIKFGSWMGGDRDGNPNVTAKVSKDVSLLSRWMAIDLYVREVDSLKFELSMKRCSDKLSKLAQEILEEANDEENHRELWNESRSVSQLKHSNKQASPLPTKLPSGAHLPSCAEKGGSEHPRLMPGADYKQFNPKGGEISSSTESSGGSPNVRSSVPISPNSSASSLVSMTRSPSFNSSQQLLAQRKLFAESQIGRTSFHRLLEPKLPQLPGIAPYRVVLGNVKDKLLRTRRRLELLLEDGPCEHNPMNYYETTDQLLEPLLLCYESLQSCGSGVLADGRLADLIRRVTTFGMVLMKLDLRQESGRHAETLDAVTRYLDLGTYSEWDEEKKLNFLTRELKGKRPLIPPSIEVAPDVREVLDTFRTAAELGSDSFGAYVISMASNASDVLAVELLQKDARLAVSGELGRACPGGTLRVVPLFETVKDLRGAGSVIRKLLSIDWYRQHILKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACKEYGIKVTLFHGRGGSIGRGGGPTYMAIQSQPPGSVMGTLRTTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATLRPPLPPREEKWRNLMEDISNISCQCYRSVVYENPEFLSYFHEATPQSELGFLNIGSRPTRRKSTTGIGNLRAIPWVFAWTQTRFVLPAWLGVGAGLKGASEKGQTEELRAMYREWPFFQSTIDLIEMVLGKADIPIAKHYDEVLVSEKRQKLGSQLRDELIQTGKFVLAVSGHEKPQQNNRSLRKLIESRLPFLNPMNMLQVEILKRLRSDDDNLKARDALLITINGIAAGMRNTG 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03172 1055 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 713 725 IPR033129 -
Phco8g03172 1055 FunFam Phosphoenolpyruvate carboxylase 4 428 549 - -
Phco8g03172 1055 MobiDBLite consensus disorder prediction 391 428 - -
Phco8g03172 1055 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 150 161 IPR018129 -
Phco8g03172 1055 Pfam Phosphoenolpyruvate carboxylase 19 334 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco8g03172 1055 Pfam Phosphoenolpyruvate carboxylase 467 1055 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco8g03172 1055 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 17 1055 IPR015813 GO:0003824
Phco8g03172 1055 Gene3D Phosphoenolpyruvate/pyruvate domain 420 549 - -
Phco8g03172 1055 Gene3D Phosphoenolpyruvate/pyruvate domain 289 354 - -
Phco8g03172 1055 MobiDBLite consensus disorder prediction 341 356 - -
Phco8g03172 1055 Hamap Phosphoenolpyruvate carboxylase [ppc]. 9 1055 IPR022805 GO:0006099|GO:0008964|GO:0015977
Phco8g03172 1055 MobiDBLite consensus disorder prediction 327 428 - -
Phco8g03172 1055 PRINTS Phosphoenolpyruvate carboxylase signature 202 218 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco8g03172 1055 PRINTS Phosphoenolpyruvate carboxylase signature 261 276 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco8g03172 1055 PRINTS Phosphoenolpyruvate carboxylase signature 149 162 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco8g03172 1055 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 4 1055 IPR021135 GO:0006099|GO:0008964|GO:0015977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03172 Phco-Chr8 46348558 46359612 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g03172 8 46348558 46359612 Phco8g03172 8 46348558 46359612 ECH