Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03165 ATGGCGTCTGAGAGCGCTTCCCGATCGAGTTCCGCTGCCGATTCCTACATTGGGAGCTTGATAAGCTTGACCTCCAAGAGTGAGATCAGATACGAAGGCATTCTGTACAACATCAATACTGAAGAGTCCAGTATTGGCCTTAGAAACGTGCGATCTTTTGGAACAGAAGGAAGGAAAAAGGATGGCCAGCAAATTCCTCCTGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGGATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACCCCACAAGTCAACAATGACCCAGCTATTATTCAGTCTCACTATGCTCGCCCAGTCGCCACATCTACAAGTTTGCCTTCGGCTGTAAGTGGGTCGGTGACTGATCTTAGCTCTCATACCCCCCAGCTTGGACATCCTGGGTCAAATTTTCAAGGGCCCTTGCCTTTGTATCAACCTGGAGGGAACATAGGATCATGGGGAGCTTCTCCAACTGCTCCAAATACAAATGGTAGTAGACTTGCTATGCCAATGTATTGGCAAGGATATTATGGTGCCCCAAATGGGCTTCCTCATTTACACCAACCATCTTTGCTTCAACCACCACCTGGTTTATCAATGCCTTCATCTATGCAGCAGCCAATGCAGTATCCCAATTTCAGTCCTTTACCTACTGTATCTTCTAATTTGCCAGAATTACCATCATCTTTGCTACATGTGAGTTCTAGTATCTCTAGTGTAACAGCTGCATTGCCTTCAGCATCATCTACTTTGCCTCCTGCACCATCTGCTTTGCCTCCTGCTCCTTCTTCTTTGCCTCCTGCTCCTTCTGCTTTGCCTCCTGCACCTTCTACTTTGCCTACTGCACCTTCTGCTTTGCCTCTTGCACCTTCTGCTTTACCTCATGCATCTTCTGCCTTATCTCCTGTACCCTCTGCAACACTTGCTTCTGAAATTTTACCAGTATCAGTAACAAACAAGGCACCCAATGTTTCAACTTCAGCAGTTAGTTTAGCCGCTAACTTACCATCACTGACTTCCCTGACCAATTCTGGTACTGATATAAATGCTTTAGTGCCACCAATCTCCAGTAAACCAAATGCAATTTCAGGTTCAAGTTTGCCCTATCAAACTGTATCCCAGTTGTCTCCTGCTGTTGTTGGATCATCAACTTCTATACACGCAGAAACATCAACCCTTTCTCTGATAACCCCAGGTCAATTATTGCAACAAGGACCAACTATAGTTTCTTCTGCTCAGCCTTCACAAGCATCTCATAAGGATGTTGAAGTGGTTCAGGTATCATCAACATCATCTCCTGAGATATCTCTGCCAGTTTCTGCTGCAATTCAACCACCAATTCTGCCATTGCCAGTAACCTCACGGCCCAATCACAGGCCTGGTGGTGTTCCTACCCAATCTCATCATGGCTATAGTTATAGAGGACGTGGAAGAGGAAGAGGAACTGGGGGTGTGCGCCCAGTCACAAAATTCACTGAAGATTTTGATTTCATGGCAATGAATGAGAAGTTCAAAAAGGATGAAGTTTGGGGTCATCTTGGTAAAAATAAGTCTCATTCAAAAGACAAGGATGGGGAAGGAAATGCCTTTGATGAAGATTATCAAGACGAAGAGATTGAAGATTTATCAAACTTTGAGGTTAAGCCTATTTATAACAAGGATGACTTCTTTGATTCACTCTCTTCCAATGTGCATGATAATGCTCCACAGAATGGAAGGACTAGATACTCTGAACAAATCAAGATTGATACTGAGACATTTGGTGATTTTGTGAGGCACCGTGGTGGCCGTGGGGGTCGCGGCCCTGGCCGTGGTGGACGTTTTCGGGGTGGTTATTATGGAAGAGGAGGAGGATATGGCTATTCTGGACGGGGTAGGGGCCGTGGTATGCCAGGTCGCAATTTGTAG 1932 0.4534 MASESASRSSSAADSYIGSLISLTSKSEIRYEGILYNINTEESSIGLRNVRSFGTEGRKKDGQQIPPGDKVYEYILFRGTDIKDLQVKSSPPVQPTPQVNNDPAIIQSHYARPVATSTSLPSAVSGSVTDLSSHTPQLGHPGSNFQGPLPLYQPGGNIGSWGASPTAPNTNGSRLAMPMYWQGYYGAPNGLPHLHQPSLLQPPPGLSMPSSMQQPMQYPNFSPLPTVSSNLPELPSSLLHVSSSISSVTAALPSASSTLPPAPSALPPAPSSLPPAPSALPPAPSTLPTAPSALPLAPSALPHASSALSPVPSATLASEILPVSVTNKAPNVSTSAVSLAANLPSLTSLTNSGTDINALVPPISSKPNAISGSSLPYQTVSQLSPAVVGSSTSIHAETSTLSLITPGQLLQQGPTIVSSAQPSQASHKDVEVVQVSSTSSPEISLPVSAAIQPPILPLPVTSRPNHRPGGVPTQSHHGYSYRGRGRGRGTGGVRPVTKFTEDFDFMAMNEKFKKDEVWGHLGKNKSHSKDKDGEGNAFDEDYQDEEIEDLSNFEVKPIYNKDDFFDSLSSNVHDNAPQNGRTRYSEQIKIDTETFGDFVRHRGGRGGRGPGRGGRFRGGYYGRGGGYGYSGRGRGRGMPGRNL 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03165 643 MobiDBLite consensus disorder prediction 456 495 - -
Phco8g03165 643 CDD LSm14_N 16 87 IPR025609 -
Phco8g03165 643 MobiDBLite consensus disorder prediction 253 291 - -
Phco8g03165 643 SMART FDF_2 497 599 IPR019050 -
Phco8g03165 643 Pfam FDF domain 498 596 IPR019050 -
Phco8g03165 643 ProSiteProfiles DFDF domain profile. 491 527 IPR025762 -
Phco8g03165 643 Pfam Scd6-like Sm domain 16 89 IPR025609 -
Phco8g03165 643 Gene3D - 6 92 - -
Phco8g03165 643 PANTHER SCD6 PROTEIN-RELATED 284 637 - -
Phco8g03165 643 FunFam Trailer hitch, isoform C 10 92 - -
Phco8g03165 643 ProSiteProfiles TFG box profile. 579 599 IPR025768 -
Phco8g03165 643 MobiDBLite consensus disorder prediction 260 291 - -
Phco8g03165 643 SUPERFAMILY Sm-like ribonucleoproteins 15 92 IPR010920 -
Phco8g03165 643 MobiDBLite consensus disorder prediction 600 620 - -
Phco8g03165 643 ProSiteProfiles Sm domain profile. 8 91 IPR047575 GO:0003723
Phco8g03165 643 SMART LSM14_2 10 110 IPR025609 -
Phco8g03165 643 ProSiteProfiles FFD box profile. 557 572 IPR025761 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03165 Phco-Chr8 46251322 46257475 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g03165 8 46251322 46257475 Phco8g03165 8 46251322 46257475 ECH