Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03153 ATGAAAAAGGAATTAGATGATCAAGGACAGGGTTCCTCTCAACCAATCAACAACAATAACAACAACATTCAAACCTACCAAGAGCACCTTCTCCTTCAACAACAGATGCATCAGCAGCAACAAGACAGTGACATCTTCGGGGGTTCAAGAGGGTTAATGTTCCCTGAAATTGCTCCAATCATGCAACCATGGTCCCTGCCTCCGGTTCACTCATTCAACCCGGGTCCGGTTCACTACAACAACACCAACCCAGTCCGAGACCATCATGACCAAGCCTTTATAGTCCCTCCCACACCTTCACCCTATTCAAGCTTCTTCAGCAGAAGGGTCCCTTCTCTTCAATTTGCATACGGGAGTCCTTCTTCTGATCACCACCATCTAAGGATCATATCTGACACCCTTGGACCTATGGTTCAACCCGGTTCAGCACCCTTTGGACTCCAAGCAGAGTTAGGAAAACTGACTGCTCAAGAAATCATGGAGGCTAAGGTTCTTGCTGCATCAAAGAGTCACAGTGAAGCAGAAAGAAGACGTAGAGAGAGAATCAACAACCATCTTGCTAAGCTGCGTAGTTTACTTCCAAACACTACCAAAACAGATAAAGCTTCGCTGCTAGCGGAAGTGATTCAGCACGTGAAGGAGCTGAAGCGCCAAACCTCCCTCATAGCGGAAACTAGTGCAGTGCCAACCGAGGCAGACGAGTTGACAGTGGATGCAGCTAACGAGGATGGAAAGTTTGTGATCAAAGCCTCAATGTGCTGTGAAGATAGGTCAGATCTCTTACCTGACCTCATCAAAACGTTGAAGGCCTTGAAGCTCAGAACCCTCAAGGCTGAGATCACATCGGTTGGTGGGCGTGTGAAGAACGTGTTAGTCATTGCTGGAGACGAAGAAAGTCAAAACACCAATGGAGAACAAAGCATGCAGCAGCAACGACAATATTGTATTACCTCAATACAAGAAACACTGAAGGCAGTGATGGAGAAGAGTGGTGGTGGTGATGAATCAGCTTCTGGGAATGTTAAGCGCCAAAGGACTAATAATATCAATTTCCTTGAACAAAGGTCTTTATAA 1074 0.4618 MKKELDDQGQGSSQPINNNNNNIQTYQEHLLLQQQMHQQQQDSDIFGGSRGLMFPEIAPIMQPWSLPPVHSFNPGPVHYNNTNPVRDHHDQAFIVPPTPSPYSSFFSRRVPSLQFAYGSPSSDHHHLRIISDTLGPMVQPGSAPFGLQAELGKLTAQEIMEAKVLAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSAVPTEADELTVDAANEDGKFVIKASMCCEDRSDLLPDLIKTLKALKLRTLKAEITSVGGRVKNVLVIAGDEESQNTNGEQSMQQQRQYCITSIQETLKAVMEKSGGGDESASGNVKRQRTNNINFLEQRSL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03153 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Phco8g03153 357 MobiDBLite consensus disorder prediction 1 21 - -
Phco8g03153 357 Pfam Helix-loop-helix DNA-binding domain 169 215 IPR011598 GO:0046983
Phco8g03153 357 FunFam transcription factor bHLH30 161 224 - -
Phco8g03153 357 CDD bHLH_AtAIG1_like 161 239 - -
Phco8g03153 357 CDD ACT_UUR-ACR-like 253 327 - -
Phco8g03153 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 222 IPR036638 GO:0046983
Phco8g03153 357 SMART finulus 172 221 IPR011598 GO:0046983
Phco8g03153 357 Gene3D - 163 222 IPR036638 GO:0046983
Phco8g03153 357 PANTHER TRANSCRIPTION FACTOR BHLH30 40 350 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03153 Phco-Chr8 46146398 46149221 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g03153 HLH 2.5e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g03153 8 46146398 46149221 Phco8g03153 8 46146398 46149221 ECH