LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco8g03148	ATGGCCACTGTTGCAACTACAGGAATTGGTGTAGGAGTGACAAAGCTCCAACAGCTCGAAAAACCAAAGCACAAGTCCTTGTTTCTTGGCCAGAGGCTTAGGATTAGAACCTCTGGGGAGGCTCAATGCAGTGCAAGATTCAATGTCTCAAACCCAAGAGTGGTTCAAGTTTTTGCTCTAGGGGGTGAATGGATTGACACAGTTCACAACCTTTTTGTGGGTGTTGGGGTTGGACTTCCTTGCAGTGTGATGCAGTGTGGGGATGTAATCTATAGGAGCACTCTTCCTAAGTCCAATGGCTTGACACTTACTGTCCCTGGGGTGATTCTGGCTTTGGGGACTCTATCTTACCTTTGGGCCACACCTGGTGTGGCACCTGGTTTCTTTGACATGTTTGTTCTTGCCTTTGTTGAGAGGTTCTTCCGACCCAGTTACAAGAAGGATGATTTTGTTCTGGGAAAGAAGTTGGGGGAGGGATCATTTGGAGTGGTTTATAGAGTGTCACTGGCCAACAAACCCTCTTCAAAGGAAGGTGACTTAGTCTTGAAGAAGGCGACTGAATATGGTGCGGTTGAAATTTGGATGAATGAGCGTGTACGAAGAGCTTGTGCAAGCAGCTGTGCAGATTTTGTCTATGGTTTTCTTGAGAGCTCTTCTAAGAAATCTGCTGCTGAATACTGGCTTATATGGCGGTTTGAAGGGGATGCCACCCTAGCTGACTTGGTGCAGAGTAGAGAGTTTCCATATAATGTTGAAACATTAATTTTGGGTGTGGTTCAAGACTTGCCCAAAGGATTGGAAAGAGAAAATAGAATCATTCAGACAATCATGAGACAAATATTGTTTGCACTGGATGGTCTTCATTCAACTGGTATTGTGCATAGGGATATTAAGCCACAGAACATTATTTTCTCCGAAGAGTCTCGTACATTCAAAATCATTGATCTTGGAGCTGCTACAGACCTGCGAGTGGGCATAAACTACATTCCGAAGGAGTTTCTTTTGGATCCGAGATATGCTGCACCAGAGCAGTACATCATGAGCACACAAACTCCTTCAGCACCCTCAGTTCCAGTTGCAACTGCACTTTCCCCAGTCTTATGGCAGTTGAATTTGCCAGACAGATTTGACATCTATAGTGCTGGTTTAATCTTTCTTCAGATGGCCTTCCCTGGTCTACGGTCTGATAATAGCCTCATTCAATTCAACCGACAATTAAAGAGGTGTGACTATGACATAGTTGCATGGAGAAAATCTTTAGAGCCTCGATGCAGCCCTGAACTGAGGAGGGGCTTTGAGCTGTTGGATTTGGATGGTGGAATAGGTTGGGAACTTCTAAAATCAATGGTAAGGTACACAGCAAGACAAAGGTTGAGTGCCAAAGCAGCATTGGCTCATCCTTACTTTGACAAAGAAGGCTTGTTGACATTGTCTTTCATGCAAACACTGAGGCTGCAGCTCTTGCGTGCAACTCAGCAGGACTATGGAGAAGCTGCCAAGTGGATTACTAATCTAATGGCAAAATCAGGAACACAGAAAGATGGTGGATTCACTGAGGCTCAGCTTCAGGAACTGAGAGAAATTGAACCCAAAAAGAAGGCTAATGCACCAAGAAATGCTCTAGCTTCAGCTCTTAAACTTCAGAGGAAACTTTTAAGAACCTTAAATGAGAGTATGGATGAGCTCAACAGACGCAGGAAAAGCTTTTGGTGGAGCAGATGGATCCCGAGAGAAGAATGA	1740	0.4454	MATVATTGIGVGVTKLQQLEKPKHKSLFLGQRLRIRTSGEAQCSARFNVSNPRVVQVFALGGEWIDTVHNLFVGVGVGLPCSVMQCGDVIYRSTLPKSNGLTLTVPGVILALGTLSYLWATPGVAPGFFDMFVLAFVERFFRPSYKKDDFVLGKKLGEGSFGVVYRVSLANKPSSKEGDLVLKKATEYGAVEIWMNERVRRACASSCADFVYGFLESSSKKSAAEYWLIWRFEGDATLADLVQSREFPYNVETLILGVVQDLPKGLERENRIIQTIMRQILFALDGLHSTGIVHRDIKPQNIIFSEESRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSVPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPGLRSDNSLIQFNRQLKRCDYDIVAWRKSLEPRCSPELRRGFELLDLDGGIGWELLKSMVRYTARQRLSAKAALAHPYFDKEGLLTLSFMQTLRLQLLRATQQDYGEAAKWITNLMAKSGTQKDGGFTEAQLQELREIEPKKKANAPRNALASALKLQRKLLRTLNESMDELNRRRKSFWWSRWIPREE	579

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco8g03148	579	Coils	Coil	545	565	-	-
	Phco8g03148	579	Gene3D	Transferase(Phosphotransferase) domain 1	260	474	-	-
	Phco8g03148	579	Gene3D	Phosphorylase Kinase; domain 1	137	231	-	-
	Phco8g03148	579	Pfam	Protein kinase domain	152	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco8g03148	579	SUPERFAMILY	Protein kinase-like (PK-like)	135	472	IPR011009	-
	Phco8g03148	579	ProSiteProfiles	Protein kinase domain profile.	150	469	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco8g03148	579	SMART	serkin_6	150	469	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco8g03148	579	PANTHER	SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED	56	554	-	-
	Phco8g03148	579	CDD	STKc_SNT7_plant	154	469	-	-
	Phco8g03148	579	FunFam	Serine/threonine-protein kinase STN7, chloroplastic	260	474	-	-
	Phco8g03148	579	ProSitePatterns	Protein kinases ATP-binding region signature.	156	183	IPR017441	GO:0005524
	Phco8g03148	579	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	292	304	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco8g03148	Phco-Chr8	46078482	46085783	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-4	Phco8g03148		Pkinase	3.4e-19	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco8g03148	8	46078482	46085783	Phco8g03148	8	46078482	46085783	ECH