Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03131 ATGAAAAATATGCAAGGCTTCAAGACAGCACAACCAACTTCACAACTCTACTGCCACTCTTCCTTTTTGCTTCGGGGAAATGACACCAACCGAAACCCAACCACCGGGTTATGTGATCTTGGGGACCTTCACCATTCCTCTGCCGTTTTTCATCAGGAAGATGGTGTTGATTTAGGCTCAAGTTCTATGTATAGTGTGAAGTCAAACAATGTTGTTGGTGGCAGTAACATGCAATATGGGACATTGAGCACGAATGTTGGGTCCACGGAGATTGGTTCAAGTGGGGGAGGGTGCATGGATACAGGGCTGCAACTGATGTACCACAAAGGAGTGGCTATGCCAACCTTGCCTTTGGGGAATGGTCATGTTGACAATTGGGCTGATTCAGGCATAGCGGATAATAGCCAACATACTGATGATACTTCCACAGATATTGACACTGATGATAGAATCCAATGCAATAGAGTTAAGAATGGTTCGCGTATGGTTATGCACTCCAAGGATAAGACAAAGATCAAACCTGAAGATCAGAAGACCCTTCGTAGACTGGCTCAGAATCGGGAGGCTGCAAAGAAGAGTCGGTTAAGGAAAAAGGCATATGTACAGCAATTGGAGAACAGCCGAGTCAAGCTTGTTCAATTAGAGCAAGAACTTCAACAAGCACGTCAGCAGGGTATATTTATTGCGGCTGAAGGGGATCAGGGTCGTTTGGCTGTTGGAAATGGCGCCTTAGCATTTGACATGGACTATGCTCACTGGGTTGATGAACACCAACGTCTGCTCAATGATCTAAGATTGGCTATAAATTCTCAAATGAGTGATGATGAGTTACATATCCTTGTTGAAGGTGTCATGGCACATTATAATGACTTATTTAGGTTAAAGAGAACAGGAGCAAAGGCTGATATATTTCACATACTTTATGGAATGTGGAAAAGTCCAGTAGAAAGACGTTTTATGTGGCTTGGTGGATTCCGTTCATCTGAACTACTCAAGATCATCATGAACCACCTTGAGCCATTGACAGAACAGCAGTTGTTCGGCATTTGTACTTTGCAAAAATCTTCTCACCAGTCCGAGGATGCTTTAGATCAAGGCATGGAAGCATTGCAGCAATATCTTGTAGAAACACTTTCCTCCACCTCCCTAGGACCCACTGGTTGTGGAAATGTTGCTGATTACATGGGCCAAATGGCTCTTGCAATGGGCAAGCTTGGTGAGCTGGAGGGTCTCCTTCATCAGGCTGACCTCTTGAAGCAACATACTCTTCAACGGTTGCAACAAATTTTGACGACACGACAAACCGCCCGAGCACTCCTTGTCCAAAATGATTTCATTTCAAGACTAAGAGCACTTAGTTCATTATGGTTGGCACGCCCTAGAGAATAG 1389 0.4435 MKNMQGFKTAQPTSQLYCHSSFLLRGNDTNRNPTTGLCDLGDLHHSSAVFHQEDGVDLGSSSMYSVKSNNVVGGSNMQYGTLSTNVGSTEIGSSGGGCMDTGLQLMYHKGVAMPTLPLGNGHVDNWADSGIADNSQHTDDTSTDIDTDDRIQCNRVKNGSRMVMHSKDKTKIKPEDQKTLRRLAQNREAAKKSRLRKKAYVQQLENSRVKLVQLEQELQQARQQGIFIAAEGDQGRLAVGNGALAFDMDYAHWVDEHQRLLNDLRLAINSQMSDDELHILVEGVMAHYNDLFRLKRTGAKADIFHILYGMWKSPVERRFMWLGGFRSSELLKIIMNHLEPLTEQQLFGICTLQKSSHQSEDALDQGMEALQQYLVETLSSTSLGPTGCGNVADYMGQMALAMGKLGELEGLLHQADLLKQHTLQRLQQILTTRQTARALLVQNDFISRLRALSSLWLARPRE 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03131 462 Gene3D - 177 226 - -
Phco8g03131 462 SMART brlzneu 174 243 IPR004827 GO:0003700|GO:0006355
Phco8g03131 462 ProSiteProfiles DOG1 domain profile. 243 459 IPR025422 GO:0006351|GO:0043565
Phco8g03131 462 Coils Coil 197 231 - -
Phco8g03131 462 Pfam bZIP transcription factor 177 218 IPR004827 GO:0003700|GO:0006355
Phco8g03131 462 Pfam Seed dormancy control 261 335 IPR025422 GO:0006351|GO:0043565
Phco8g03131 462 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 176 220 IPR004827 GO:0003700|GO:0006355
Phco8g03131 462 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 181 196 IPR004827 GO:0003700|GO:0006355
Phco8g03131 462 PANTHER TRANSCRIPTION FACTOR TGA9 125 462 - -
Phco8g03131 462 FunFam BZIP family transcription factor 177 226 - -
Phco8g03131 462 SUPERFAMILY Leucine zipper domain 178 221 IPR046347 GO:0003700|GO:0006355
Phco8g03131 462 CDD bZIP_HBP1b-like 178 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03131 Phco-Chr8 45815500 45819733 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco8g03131 DOG1 7.8e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g03131 8 45815500 45819733 Phco8g03131 8 45815500 45819733 ECH