Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03065 ATGTCTTCCACTAAGAACAAGGGAAACGCTGTTGGCGCCAAAACGGCACGAGCGTGCGACAGCTGCATAAGAAATCGAGCGCGTTGGTACTGCGCCGCCGACGACGCGTTCCTCTGCCAAGCTTGTGACTCTTCCGTTCACTCAGCGAACCCATTGGCGCGTAGACACCACCGCGTTCGCTTGAAAATCGTTTCATACATCGAAGCCAACAATAACTCATTTTCTGGAATGGGTAATGGTGCATCGTGGCACAAAGGGTTCACCAAGAAACCCCGAACGCCACGTCACGGGAAGAACGCTAATAAGGCTCTGAAGAATCGCTTCGATGTGGTACCCGAAGTGAGTCCCGAAGACACAAATTCGAATTCCCATGAAGAGAGCGTGGATGAGCTTCTTTATAGAGTGCCCGCAACTCCTTCGGCAGAGCAAGGGGTATCCGTGACCGATGAGAGGAAAGTTGATTTGTTAGGATGTGAAAGCGCGTTTGAGATCGCTGAGTTTAGTGCTGATGTTGAGAGTTTGTTGAGGGAGGGACTAGAGAGTGAGTTTGTGGGAATGGAAGAGTTGGGGCTGGTGGGTACCAATGAGGTGGAGGAGCATGCTTCGTGGGAGTGTTGTGTGGGTGGTGGGAATATGAAGGTGGAGGAGGAGGCATCTGAATTGGGATTTGATTGTGGCCATGAGCTGAATTTTTCTTTGACATGTGAAGAGGTGAAGGAAAAGGTTATTGGGTTGGATAAGAGGCAAGAAGTAGTCAAGGAGGATGATCAGCGAAAGAAGAAGAAGATACTATTGTTGCGGTTAGATTATGAGGCTGTAATCACTGCTTGGACCAGCCAAAGATCCCGGTGGACTACTGGTCATAAACCAGACTTGGGCACGATGCACTTCTGGCCTCATTGCATGGGAAGGTGTGGAGTGGAGTTTGAGCATCCTAGAGGGGAATTGGGTGAATTATTTGGGTGTGATGCAGCAATGGCAGACGGTGGAAGAGAAGCAAGAGTATCAAGATATAGAGAAAAGCGACGTAAAAGGTTGTTCTCGAAGAAAATAAGGTATGAGGTTCGAAAGTTGAATGCGGAGAAAAGACCAAGAATGAAAGGGAGGTTTGTAAAGAGGCCTTCTTTAGCGACACCACCCACTTTTCCTTTGCTAAACAAAAAAGAAGAGAGAGTATAA 1179 0.4818 MSSTKNKGNAVGAKTARACDSCIRNRARWYCAADDAFLCQACDSSVHSANPLARRHHRVRLKIVSYIEANNNSFSGMGNGASWHKGFTKKPRTPRHGKNANKALKNRFDVVPEVSPEDTNSNSHEESVDELLYRVPATPSAEQGVSVTDERKVDLLGCESAFEIAEFSADVESLLREGLESEFVGMEELGLVGTNEVEEHASWECCVGGGNMKVEEEASELGFDCGHELNFSLTCEEVKEKVIGLDKRQEVVKEDDQRKKKKILLLRLDYEAVITAWTSQRSRWTTGHKPDLGTMHFWPHCMGRCGVEFEHPRGELGELFGCDAAMADGGREARVSRYREKRRKRLFSKKIRYEVRKLNAEKRPRMKGRFVKRPSLATPPTFPLLNKKEERV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03065 392 SMART bboxneu5 14 61 IPR000315 GO:0008270
Phco8g03065 392 MobiDBLite consensus disorder prediction 364 392 - -
Phco8g03065 392 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 4 375 - -
Phco8g03065 392 ProSiteProfiles CCT domain profile. 331 373 IPR010402 GO:0005515
Phco8g03065 392 Pfam CCT motif 331 373 IPR010402 GO:0005515
Phco8g03065 392 CDD Bbox1_BBX-like 18 61 - -
Phco8g03065 392 Pfam B-box zinc finger 16 58 IPR000315 GO:0008270
Phco8g03065 392 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03065 Phco-Chr8 44994568 44996057 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Phco8g03065 CCT 1.8e-17 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g03065 8 44994568 44996057 Phco8g03065 8 44994568 44996057 ECH