Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01516 ATGGCATCACCATCAGAACTAAGTCTGGATTGCAAGCCCCAAAGCTATTCCTTGCTACTCAAATCATTTGGAGATCAAACTGATCAGACCTACAAGCTTGAAGAATTCCTCTCTCGCTTAGAGGAAGAACGTCTCAAGATTGACGCCTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTTCTCACCAACGCCATGGAGGCTTCAAGACAGCAACTTCAAGCCTTTAACGTAAACCATGGCGCAAAGCCAGTTCTTGAAGAATTCATACCCATGAAGCTCTTACCCTCAGAAAGCTCAGAGAAGGCAATAAACATGTCTGACAAGGCAAATTGGATGACGTCTGCGCAACTGTGGAGCCAAGCCAGTGAAGGAACCAAACAACAACCAACATTAACATCACCCAAAGAAGCTGATATAGGGTTCAGCATCAGCCCCAAGCTGGCTCTAGACAACAAACAAAGGAACGGTGGAGGAGCCTTCCTTCCATTCTCAAAGGAGAGAAACTCCTGCCAAGGCTCTACATTGCGGTCTCTACCTGAACTGGCCCTTGCCTCTTCGGAGAAAGAAATGGAGGACAAGAAACGTGCAGAGGTAGAAAAGGGAGTTTCGTGTCAGAACAAGAAGGAGAATTCAGGCAGTGATGGAACTGTGGTTGATCAAGGAAAAAGTGGTAGCCCAGTTGCATCATCTCTTACACAAACAACAACAACCACTGCTCAAACTCATAGGAAAGCTAGAAGGTGCTGGTCACCAGACTTGCACCGTCGATTTGTTAATGCTCTCCAGATGCTTGGCGGATCACAAGTGGCAACCCCAAAGCAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGAAATATAGGCTTCACACTAGAAGACCCAGTCCAAGTCCTCAAGCGAGTGCAGCAGCTCCACATCTCGTGGTTCTGGGCGGAATCTGGGTCCCACCGGAATATGCCACTGCGGCACACACGGCCACCCCTACTCTTTACGGTGCCCACCCAACCTCTCACGCGCCGCCGCCACACTACTGCACCGCCACTCCTGTGCCGCAAGAATTCTACACTGCGGCGCCGCAGCAGCAGCTGCTTCCGCCTCCTCCACCGCACCACAACGCGCTGCACCACCTGCAGATGTACAAGGCAGCGACACACGGCCATGGATCGCCGGATTCCGAAGTTCCTGGTTGCGGAGAGAGGTCGGAGAGCATAGAGGACGGGAAGTCGGAGAGTAGCAGCTGGAAGGGAGAGAGTGGGGAGAACGAAGGGGAGAGGAAAGGGATTGGTGAAGAGAGCAATGGGAGTGAAATCACTCTGAAATTCTAG 1353 0.51 MASPSELSLDCKPQSYSLLLKSFGDQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAFNVNHGAKPVLEEFIPMKLLPSESSEKAINMSDKANWMTSAQLWSQASEGTKQQPTLTSPKEADIGFSISPKLALDNKQRNGGGAFLPFSKERNSCQGSTLRSLPELALASSEKEMEDKKRAEVEKGVSCQNKKENSGSDGTVVDQGKSGSPVASSLTQTTTTTAQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQASAAAPHLVVLGGIWVPPEYATAAHTATPTLYGAHPTSHAPPPHYCTATPVPQEFYTAAPQQQLLPPPPPHHNALHHLQMYKAATHGHGSPDSEVPGCGERSESIEDGKSESSSWKGESGENEGERKGIGEESNGSEITLKF 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01516 450 MobiDBLite consensus disorder prediction 181 246 - -
Phco8g01516 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 301 IPR017930 -
Phco8g01516 450 Coils Coil 33 53 - -
Phco8g01516 450 MobiDBLite consensus disorder prediction 393 450 - -
Phco8g01516 450 Pfam Myb-like DNA-binding domain 246 297 IPR001005 -
Phco8g01516 450 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 424 IPR044787 GO:0003700|GO:0006355
Phco8g01516 450 MobiDBLite consensus disorder prediction 185 204 - -
Phco8g01516 450 Gene3D - 243 301 - -
Phco8g01516 450 MobiDBLite consensus disorder prediction 407 440 - -
Phco8g01516 450 MobiDBLite consensus disorder prediction 205 244 - -
Phco8g01516 450 NCBIfam myb-like DNA-binding domain, SHAQKYF class 244 299 IPR006447 GO:0003677
Phco8g01516 450 SUPERFAMILY Homeodomain-like 241 302 IPR009057 -
Phco8g01516 450 FunFam Myb family transcription factor 243 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01516 Phco-Chr8 15618273 15620644 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco8g01516 Myb_DNA-binding 9.7e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01516 8 15618273 15620644 Phco8g01516 8 15618273 15620644 ECH
Phco8g01516 8 15618273 15620644 Phco7g02381 7 41666886 41669200 PCT