Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01492 ATGTATTCCTCAAATACCTCCCTCAACGGCAATGACCTACTCTCGTACCCTAACCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACCAATTCCTCAAAAGACCAATCCAATTCCAATTACGCCCTTCCTCCTCCTCTTCCTCCTCCTTTGTCCTTTCTCCAATCCTTTGACGAAAATATCTTTCTCGAACACCACCATGACCTGCTCTTACTTCACCAGGCTCTAGCTGAGCCCGGAATCTCCAGAAATCTCGACGTTGCTGCCGAAATCGCGGCAATTCCTTGCTCTGGACAAGGTGGCAATTCCTCCCTCGACGTGCCTATGGAGCACACTACCAGGAAGAGATCCAGCAAGAGAGATCGTCACAGCAAAATCAACACCGCACGAGGCCTCAGAGACCGAAGAATGAGGTTGTCCCTCGAAGTTGCAAAGCGGTTCTTCGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTTGAGTGGCTACTAAACCAAGCAAAAGTTGAAATCAAACAACTTGCAAGGGAAAAAAACAGTGCTGGTGGTGCCAAGGGTGCATCATCAACTTCTGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGCAGTGAGTGGAGTTAACGAGGAGCAAGAGAGGGAGACACCCAACATGAAGAGAAGAACAAGTAAGGTTTGTAGAAAGAGTGCATTCAATACTACAGATAAGGAATCGAGGGAAAAGGCAAGAGAAAGGGCGAGAGAAAGAACAAGAGAGAAGATGAGGAGTCGGAGAGTACTTGCTGCAGATGCTTCAAACCTGAACCGTCTGTGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTCCGGGTACTCAGAGCCAAAGCGTGAACCACCCCTCCTTGGATTTGCACCTTCCTGAGCCTGAAGAACCAAGTTCTCACGCAAAGGAACATTTGGGAGCCGTGGAGGACATAGCGCGGCATGAAGTTAATTCTTTCGTGATCATGAACAAGTGGAGCCCAACCATGATATTCAATTCTCTCAACAACTCAGCAATCCTTCACGAACATCAATTTGCGGAATTTCAGTCCTTCGGAAAACCTTGGGAAGCCTACAACGATCACATCTAG 1131 0.4792 MYSSNTSLNGNDLLSYPNQPFCFRPFSFESNPTNSSKDQSNSNYALPPPLPPPLSFLQSFDENIFLEHHHDLLLLHQALAEPGISRNLDVAAEIAAIPCSGQGGNSSLDVPMEHTTRKRSSKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKVEIKQLAREKNSAGGAKGASSTSECEGVSSLDEVAVSGVNEEQERETPNMKRRTSKVCRKSAFNTTDKESREKARERARERTREKMRSRRVLAADASNLNRLCSWNPFETVEDSPGTQSQSVNHPSLDLHLPEPEEPSSHAKEHLGAVEDIARHEVNSFVIMNKWSPTMIFNSLNNSAILHEHQFAEFQSFGKPWEAYNDHI 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01492 376 MobiDBLite consensus disorder prediction 212 227 - -
Phco8g01492 376 MobiDBLite consensus disorder prediction 284 300 - -
Phco8g01492 376 MobiDBLite consensus disorder prediction 183 264 - -
Phco8g01492 376 ProSiteProfiles R domain profile. 242 259 IPR017888 -
Phco8g01492 376 Coils Coil 170 190 - -
Phco8g01492 376 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 102 373 IPR005333 GO:0003700
Phco8g01492 376 ProSiteProfiles TCP domain profile. 122 180 IPR017887 -
Phco8g01492 376 MobiDBLite consensus disorder prediction 284 313 - -
Phco8g01492 376 Pfam TCP family transcription factor 121 262 IPR017887 -
Phco8g01492 376 MobiDBLite consensus disorder prediction 105 133 - -
Phco8g01492 376 MobiDBLite consensus disorder prediction 236 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01492 Phco-Chr8 15343161 15344658 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Phco8g01492 TCP 5.2e-45 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g03040 3 56532524 56533726 Phco8g01492 8 15343161 15344658 ECH
Phco7g02390 7 41810660 41812233 Phco8g01492 8 15343161 15344658 ECH
Phco8g01492 8 15343161 15344658 Phco8g01492 8 15343161 15344658 ECH