Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01394 ATGGTGAAGATATGTGGAATTGGAGCTGGGTATGTAGGGGGTCCTACAATGGCTGTGATTGCCCTGAAATGTCCCTCAATTGAAGTGGCTGTGGTTGACATCTCTCACTCTCGCATATCAGCTTGGAATAGCAACAAACTCCCTATTTATGAGCCTGGCCTAGAAGAAGTGGTGAATCAGTGCAGAGGAAAGAACCTCCTCTTCAGCACCGATGTGGAAAAGCACGTTTATGAGGCAGACATAATCTTTGTTTCAGTAAACACCCCCACAAAAGTTAGAGGACTTGGAGCTGGCAAGGCTGCAGACTTGACTTATTGGGAAAGTGCAGCTAGGATGATAGCCGATGTTTCCAAGTCAAATAAGATTGTTATTGAGAAATCCACTGTCCCAGTGAGAACAGCTGAGGCAATTGAGAAAATTCTAACTCACAACACCAATAGCAAGGACATCAAGTACCAAATTCTGTCAAATCCCGAGTTTCTCTCAGAGGGAACAGCCATTCAGGACCTTCTAAACCCTGACCGGGTTCTGATTGGAGGGAACCAAGACCCTGAAGGTATAGAAGCAATCAGAAAATTGAAGGCCATATACGCTCATTGGGTGCCTGAAGACAGAATCATAGCAACCAATTTGTGGTCAGCAGAACTCTCCAAGTTAGCTGACAATGCCTTCTTGGCCCAAAGGATTTCATCTATCAATGCTATGTCTGCCTTATGTGAGGCCACTGGGGCTGAAGTTTCACAAGTTTCTCTTGCTCTCGGCAAAAACACCAAAATTGGGCCAAAGTTCCTCAATGCCAGTGTTGGTTTTGGTGGCTCTTGCTTTCAAAAGGACATACTCAATTTGGTGTACATATGTGAGAGCAATGGCCTCACTGAAGTGGCAAATTACTGGAAAGAAGTGATCAAGGTGAATGACTACCAAAAGAGTAGGTTTGTGCACAGGGTTGTGACCTCAATGTTCAACACAGTTTCAGGTAAGAAGATTGCAATTCTGGGGTTTGCCTTCAAGAAGGACACTAGTGACACAAGAAAAACTCCTGCAATTGATGTTTGCAAAGGCCTTTTGGGAGATAACGCGTTCTTGAGTATCTATGATCCACGCGTTACTGAGACGCAGATTCAAAAGGATTTGTCAATGGATGGTGTTGAATGGGACCATCCAATCCACCTGCAGCCAAAGAGTTCTAGTGTTGTGAAACAGGTTAATGTTGTTGGAGATGCTTATGAGGCAACTAGAGATGCTCATGGACTATGCATTCTTACAGAGTGGGATGAGTTCAAGACAGTTGACTATGAAAGAGTGTATGACAACATGGAGAAACCAGCATTTGTGTTCGATGGTAGAAACATGTTAAATGTTGACAAGTTGAGGGAAATTGGATTCATTGTTTACTCAATTGGGAGGCCTTTAGACCAATGGCTGAAGAACATGAAGATCGTGAATTGA 1449 0.4369 MVKICGIGAGYVGGPTMAVIALKCPSIEVAVVDISHSRISAWNSNKLPIYEPGLEEVVNQCRGKNLLFSTDVEKHVYEADIIFVSVNTPTKVRGLGAGKAADLTYWESAARMIADVSKSNKIVIEKSTVPVRTAEAIEKILTHNTNSKDIKYQILSNPEFLSEGTAIQDLLNPDRVLIGGNQDPEGIEAIRKLKAIYAHWVPEDRIIATNLWSAELSKLADNAFLAQRISSINAMSALCEATGAEVSQVSLALGKNTKIGPKFLNASVGFGGSCFQKDILNLVYICESNGLTEVANYWKEVIKVNDYQKSRFVHRVVTSMFNTVSGKKIAILGFAFKKDTSDTRKTPAIDVCKGLLGDNAFLSIYDPRVTETQIQKDLSMDGVEWDHPIHLQPKSSSVVKQVNVVGDAYEATRDAHGLCILTEWDEFKTVDYERVYDNMEKPAFVFDGRNMLNVDKLREIGFIVYSIGRPLDQWLKNMKIVN 482
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01394 482 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 330 453 IPR014027 GO:0016616|GO:0051287
Phco8g01394 482 FunFam UDP-glucose 6-dehydrogenase 243 480 - -
Phco8g01394 482 NCBIfam nucleotide sugar dehydrogenase 3 450 IPR017476 GO:0016616
Phco8g01394 482 PIRSF UDPglc_GDPman_dh 2 469 IPR017476 GO:0016616
Phco8g01394 482 FunFam UDP-glucose 6-dehydrogenase 211 242 - -
Phco8g01394 482 FunFam UDP-glucose 6-dehydrogenase 1 210 - -
Phco8g01394 482 Gene3D - 243 481 - -
Phco8g01394 482 Gene3D - 211 242 - -
Phco8g01394 482 SMART UDPG_MGDP_dh_C_a_2_a 330 454 IPR014027 GO:0016616|GO:0051287
Phco8g01394 482 PIRSF UDPglc_DH_euk 1 481 IPR028356 GO:0003979
Phco8g01394 482 Gene3D - 1 210 - -
Phco8g01394 482 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 212 306 IPR014026 GO:0016616|GO:0051287
Phco8g01394 482 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 188 IPR001732 GO:0016616|GO:0051287
Phco8g01394 482 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 473 IPR028356 GO:0003979
Phco8g01394 482 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 212 311 IPR008927 -
Phco8g01394 482 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 216 IPR036291 -
Phco8g01394 482 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 317 465 IPR036220 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phco8g01394 Phco-Chr8 14448262 14449710 Wgd
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02899 3 55435786 55437228 Phco8g01394 8 14448262 14449710 ECH
Phco8g01394 8 14448262 14449710 Phco8g01394 8 14448262 14449710 ECH