Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01019 ATGCCTTCAATGCTAATACCCACCTTGCTCTTCCTTTCCTTCACTTTCTCACATGCTACGGCCATGTCCATCATCAATTACTCAGAAAACGAGGTCATGGACATGTACGAGGAGTGGTTGGTGAAGCACCGGAAGGTGTACAATGGGTTGGGTGAGAAGGAAAAGAGGTTTCAAGTGTTCAAGGACAACTTAGGATTCATAGAAGACCACAACGCTCAGAACAACACATACACACTTGGGTTGAACAAATTTGCTGATATCACCAATGAGGAATACCGTGCCATGTATTTGGGCACCAGAACTGATGCCAAACGCAGGGTCATGAAAACCCAGAGCACCGGTCACCGCTATGCTTACAACTCCGGTGATCAGTTGCCGGTGCATGTGGATTGGAGGTTGCAAGGTGCAGTTGCTCCAATCAAAGATCAAGGAAGTTGTGGAAGTTGTTGGGCGTTCTCAACAGTGGCTGCTGTGGAAGCTATAAATAGCATAGTGACAGGGGAGTTTGTGTCCCTATCAGAACAAGAACTTGTGGACTGTGACAGAGCCTATAATCAAGGATGCAACGGTGGCGCCATGGACTACGCATTCCAGTTCATCATTAAAAATGGTGGCATAGACACAGAAGAAGATTATCCATACCAGGGCCATGATGGAACTTGTGATCCAACTAAGAAAAAGGCTAAGGTAGTGCAAATTGATAGTTACGAGGATGTTCCACCATATAACGAGGATGCCTTAAAGAAAGCTGTTGCTCATCAACCCGTAAGCGTTGCTATTGAAGCCTCTGGCAGGGCGTTGCAACTTTATCAATCTGGTGTGTTTACTGGTAAATGTGGAACAGAGTTAGATCATGGTGTGGCGGTTGTTGGATATGGGACTGAAAATGGTGTGGATTACTGGCTGGTGAGGAATTCATGGGGCACTGGATGGGGTGAGGACGGCTACTTCAAGATGGAGCGGAACGTGAGAAGCACCTCCACAGGGAAGTGTGGAATCGCAATGGACTGTTCCTACCCTGTTAAGTATGGTCTAAACTCTGCAGTTCCTAGTTCAGTTTATGAAAGCACTGAGGCGTCTATTAGCAGTGCTTGA 1095 0.4667 MPSMLIPTLLFLSFTFSHATAMSIINYSENEVMDMYEEWLVKHRKVYNGLGEKEKRFQVFKDNLGFIEDHNAQNNTYTLGLNKFADITNEEYRAMYLGTRTDAKRRVMKTQSTGHRYAYNSGDQLPVHVDWRLQGAVAPIKDQGSCGSCWAFSTVAAVEAINSIVTGEFVSLSEQELVDCDRAYNQGCNGGAMDYAFQFIIKNGGIDTEEDYPYQGHDGTCDPTKKKAKVVQIDSYEDVPPYNEDALKKAVAHQPVSVAIEASGRALQLYQSGVFTGKCGTELDHGVAVVGYGTENGVDYWLVRNSWGTGWGEDGYFKMERNVRSTSTGKCGIAMDCSYPVKYGLNSAVPSSVYESTEASISSA 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01019 364 SMART Inhibitor_I29_2 36 92 IPR013201 -
Phco8g01019 364 Gene3D Cysteine proteinases 20 343 - -
Phco8g01019 364 CDD Peptidase_C1A 126 340 IPR039417 -
Phco8g01019 364 FunFam Cysteine protease 1 18 343 - -
Phco8g01019 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 300 319 IPR025661 -
Phco8g01019 364 SUPERFAMILY Cysteine proteinases 28 341 IPR038765 -
Phco8g01019 364 PRINTS Papain cysteine protease (C1) family signature 285 295 IPR000668 GO:0006508|GO:0008234
Phco8g01019 364 PRINTS Papain cysteine protease (C1) family signature 143 158 IPR000668 GO:0006508|GO:0008234
Phco8g01019 364 PRINTS Papain cysteine protease (C1) family signature 300 306 IPR000668 GO:0006508|GO:0008234
Phco8g01019 364 Pfam Cathepsin propeptide inhibitor domain (I29) 36 92 IPR013201 -
Phco8g01019 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 283 293 IPR025660 -
Phco8g01019 364 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 28 335 IPR013128 GO:0008234
Phco8g01019 364 Pfam Papain family cysteine protease 125 341 IPR000668 GO:0006508|GO:0008234
Phco8g01019 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 143 154 IPR000169 -
Phco8g01019 364 SMART pept_c1 125 341 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01019 Phco-Chr8 10625978 10628637 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00482 7 3519171 3521770 Phco8g01019 8 10625978 10628637 ECH
Phco2g00293 2 2367727 2371676 Phco8g01019 8 10625978 10628637 ECH
Phco8g01019 8 10625978 10628637 Phco8g01019 8 10625978 10628637 ECH