Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01014 ATGGCTATCGGCGACGATGCACAGCACCACTCTCCCTCGATCCTCGATGCCCTTCTCTGCGAAGAGCGTGACACCTTCGAGGAAGATTTGGATGCAAACGGCGCTGATTGTGAGATCAACAACGATGACCCATCTGGAAGAAAGTTGCAATCTTTGCCTTTGGTTTTGCTTCAGAATGATCTGTTCTGGGAAGATGAAGAGCTTGTGTCTTTAATCTCGAAAGAGGGAGAGACCCATTCGTGTTCTCTTATTGCCATTGCCGATGGGCCCTTAGAAGGGTCTCGTGTGGAGGCTGTGAACTGGATTTCAAAAGTTTGTGGACATTATGGGTTTTCTGCTTTGACTACTGTTCTTGCCGTCAACTACTTTGATCGGTTCATCCCAAGTCTGAGGTTTCACGCGGACAAGCCGTGGATGACACAGCTTACTGCTGTTGCCTGTTTGTCCCTTGCTGCAAAAACGGAAGAGACGCATGTGCCGCTTCTTTTGGACCTTCAAGTGGAGGAATCAAGGTTTGTGTTTGAGGCGAAGACTATTCAGAGAATGGAGCTGCTGGTGCTGTCAACTCTTAAATGGAGGATGCATCCGGTGACTCCAATTTCTTTCTTTGAACACATTGTCAGAAGGCTTGGTTTGAAGAGTCGCTTGCATTGGGAATTTCTATGGCGTTGTGAGCGGGTTCTTCTCAATGTCACTGCGGATTCAAGGGCTATGAGTTATCTTCCTTCTACATTGGCTGCAGCTACCATGATCCATGTTATTAAAGAGATTGAATCATTTAACGCTACAAAGTACATTGATCAGCTTCTGGGTTTACTAAAGATTAGCGAGGAACAAGTGAACCAGTGCTACAAGCTTATGCAGAAAATTTTAGGTCGCAATGAAGGCATTTACAGCCTTCACCAGAAACGCAAGCGTCTATCTGAACCAAGTAGCCCAGGTGGTATCCTTGATTCAACTTTCAGTTGTGATAGCTCAAATGATTCGTGGGCATTGTCATCATCAGTCTCACTCTCACTGGAGCCGCCTTTTAAGAGGAGAAAAGCTCAGGACCAGCAAATGCGACTGCCTTCTGTTAGTCGCGTGTCAATTGATGTTCTTAATAGCCCTCGTTAA 1116 0.4606 MAIGDDAQHHSPSILDALLCEERDTFEEDLDANGADCEINNDDPSGRKLQSLPLVLLQNDLFWEDEELVSLISKEGETHSCSLIAIADGPLEGSRVEAVNWISKVCGHYGFSALTTVLAVNYFDRFIPSLRFHADKPWMTQLTAVACLSLAAKTEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFLWRCERVLLNVTADSRAMSYLPSTLAAATMIHVIKEIESFNATKYIDQLLGLLKISEEQVNQCYKLMQKILGRNEGIYSLHQKRKRLSEPSSPGGILDSTFSCDSSNDSWALSSSVSLSLEPPFKRRKAQDQQMRLPSVSRVSIDVLNSPR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01014 371 SUPERFAMILY Cyclin-like 179 291 IPR036915 -
Phco8g01014 371 FunFam CYCLIN D32 196 285 - -
Phco8g01014 371 CDD CYCLIN_AtCycD-like_rpt1 95 192 - -
Phco8g01014 371 SUPERFAMILY Cyclin-like 62 195 IPR036915 -
Phco8g01014 371 SMART Cyclin_C_2 197 310 IPR004367 -
Phco8g01014 371 Pfam Cyclin, C-terminal domain 197 295 IPR004367 -
Phco8g01014 371 Gene3D - 93 195 - -
Phco8g01014 371 FunFam D3-type cyclin 88 195 - -
Phco8g01014 371 Pfam Cyclin, N-terminal domain 94 194 IPR006671 -
Phco8g01014 371 Gene3D - 196 285 - -
Phco8g01014 371 PANTHER CYCLINS 84 293 IPR039361 -
Phco8g01014 371 SMART cyclin_7 100 188 IPR013763 -
Phco8g01014 371 CDD CYCLIN_AtCycD-like_rpt2 197 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01014 Phco-Chr8 10578986 10580446 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01149 4 9456315 9457620 Phco8g01014 8 10578986 10580446 ECH
Phco7g00486 7 3549156 3550764 Phco8g01014 8 10578986 10580446 ECH
Phco2g00298 2 2409610 2411136 Phco8g01014 8 10578986 10580446 ECH
Phco8g01014 8 10578986 10580446 Phco8g01014 8 10578986 10580446 ECH
Phco8g01014 8 10578986 10580446 Phco4g01149 4 9456315 9457620 PCT