Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01010 ATGATGGCCGTAAGCCGAAAGGACATGGACCGGATCAAGGGTCCATGGAGCCCGGAAGAGGATGAGGCTTTGCAGAAACTGGTGGAGAGGCTTGGGCCCAGAAACTGGTCGCTCATAAGCAGGTCAATCCCAGGCCGCTCTGGGAAATCGTGCAGGCTCCGCTGGTGCAACCAGCTGTCACCCCAGGTTGAGCACCGGGCTTTCACGCCCGAGGAGGACGACACGATAATCCGCGCTCATGCTCGCTTCGGTAACAAGTGGGCCACTATAGCCCGCCTTCTCTCGGGTCGCACCGATAACGCCATCAAAAACCACTGGAACTCAACCTTAAAGCGCAAGTGCGCCTCCATCATGAACGCCGAGGATCCCGCCGCTGCCGCTGCCGGTTACAGCCCGCAACCGCTCAAGCGCTCCGTCAGCGCCGGCGCAGCCCTTCCCCCGGGAAGCCCCTCAGGATCCGATGTGAGCGAGACCAGCGCCCCTGGCGTAGTCTCCCCATCACACGTGTTCCGGCCCGTGCCGGTTCGACCTGTGGTCGAAACGGCGTCGTCGTGCGACGATGGACCTACCACTTCACTGTCGCTGTCTCTTCCCGGGGTCGAGTCATCGGAAGCCTCGAATCGGGCAACGGCGATGCAAGCTAATCCCTTCGCGATAGGGACGGTGACCAACGTTGCCATTCCGGCGGCAGAGGTTGGGATGGGAGCCTTGAATTTGAGTGCGGAGTTTATGGCGGTGATGCATGAGATGATAAAGAAGGAGGTTCGGAGTTACATGGAGCAGCAGAGTGGGATGTGTTTTCAGGGCGTGGACGGGTTTAGGAACGCGTCGGTGAAGCGAATTGGGATTAGCAGGGTTGATTCCTAA 867 0.5975 MMAVSRKDMDRIKGPWSPEEDEALQKLVERLGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASIMNAEDPAAAAAGYSPQPLKRSVSAGAALPPGSPSGSDVSETSAPGVVSPSHVFRPVPVRPVVETASSCDDGPTTSLSLSLPGVESSEASNRATAMQANPFAIGTVTNVAIPAAEVGMGALNLSAEFMAVMHEMIKKEVRSYMEQQSGMCFQGVDGFRNASVKRIGISRVDS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01010 288 Gene3D - 12 64 - -
Phco8g01010 288 Gene3D - 66 128 - -
Phco8g01010 288 Pfam Myb-like DNA-binding domain 13 59 IPR001005 -
Phco8g01010 288 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Phco8g01010 288 CDD SANT 15 57 IPR001005 -
Phco8g01010 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 63 IPR017930 -
Phco8g01010 288 MobiDBLite consensus disorder prediction 184 199 - -
Phco8g01010 288 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Phco8g01010 288 SMART sant 64 112 IPR001005 -
Phco8g01010 288 SMART sant 12 61 IPR001005 -
Phco8g01010 288 FunFam Transcription factor MYB44 67 113 - -
Phco8g01010 288 PANTHER MYB PROTEIN-RELATED 13 187 - -
Phco8g01010 288 FunFam MYB transcription factor 13 64 - -
Phco8g01010 288 CDD SANT 67 110 IPR001005 -
Phco8g01010 288 MobiDBLite consensus disorder prediction 180 199 - -
Phco8g01010 288 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Phco8g01010 288 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Phco8g01010 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 114 IPR017930 -
Phco8g01010 288 MobiDBLite consensus disorder prediction 137 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01010 Phco-Chr8 10515293 10516159 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco8g01010 Myb_DNA-binding 2.3e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01154 4 9499515 9500698 Phco8g01010 8 10515293 10516159 ECH
Phco7g00489 7 3583009 3584149 Phco8g01010 8 10515293 10516159 ECH
Phco2g00301 2 2458475 2459305 Phco8g01010 8 10515293 10516159 ECH
Phco8g01010 8 10515293 10516159 Phco8g01010 8 10515293 10516159 ECH
Phco8g01010 8 10515293 10516159 Phco4g01154 4 9499515 9500698 PCT