Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00427 ATGCAAAACAACACACCTTCAACTTCAATTATGCGAACGCTTTGTGATGCTTGTGAGAGCGCCGCTGCTATCGTTTTCTGCGCCGCCGATGAGGCCGCGCTGTGCCATGCCTGTGATAAGAAGGTTCACATGTGTAATAAGCTAGCAAGCCGGCATGTAAGGGTTGGTCTAGCAAGTCCAAGTGATGTGCCGCGCTGCGACATTTGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGACGGAAGTTCCCTCTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAAAGGACACACGAAAGATATCTTCTTTTTAGGCAGAGAGTTGAGTTTCCAGGAGATAAACCTGGTAAGTCAGAAAACCCAGCTTCACAACCTCTGGATCCAGGTGAGACTAAAAGAGGACAAAATGCACTGCCCAAAATAAAAATGGGAGAGAAACAGCAAAATTACAGGATGCCTCTAATTCTGACGCCAGAACCTAATGCCGATGAGCATGCCATGATGGGAACCAAAATGATTGATTTGAACATGAAGCCTCAGAGAATACATGAGCCAACATCAAATAATCAGGTTAGGATGCATGAAAAGTAA 600 0.4483 MQNNTPSTSIMRTLCDACESAAAIVFCAADEAALCHACDKKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHERYLLFRQRVEFPGDKPGKSENPASQPLDPGETKRGQNALPKIKMGEKQQNYRMPLILTPEPNADEHAMMGTKMIDLNMKPQRIHEPTSNNQVRMHEK 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00427 199 SUPERFAMILY B-box zinc-binding domain 58 97 - -
Phco8g00427 199 Gene3D Classic Zinc Finger 11 105 - -
Phco8g00427 199 PANTHER B-BOX ZINC FINGER PROTEIN 22 11 138 - -
Phco8g00427 199 FunFam B-box zinc finger protein 19 12 102 - -
Phco8g00427 199 Pfam B-box zinc finger 62 102 IPR000315 GO:0008270
Phco8g00427 199 Pfam B-box zinc finger 13 52 IPR000315 GO:0008270
Phco8g00427 199 CDD Bbox1_BBX-like 66 106 - -
Phco8g00427 199 MobiDBLite consensus disorder prediction 113 148 - -
Phco8g00427 199 ProSiteProfiles Zinc finger B-box type profile. 61 106 IPR000315 GO:0008270
Phco8g00427 199 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Phco8g00427 199 CDD Bbox1_BBX-like 14 57 - -
Phco8g00427 199 SMART bboxneu5 10 57 IPR000315 GO:0008270
Phco8g00427 199 SMART bboxneu5 61 106 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00427 Phco-Chr8 3881695 3883435 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Phco8g00427 zf-B_box 1.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00427 8 3881695 3883435 Phco4g00894 4 7045351 7046704 ECH
Phco8g00427 8 3881695 3883435 Phco8g00427 8 3881695 3883435 ECH
Phco7g00120 7 805462 806557 Phco8g00427 8 3881695 3883435 ECH
Phco9g00466 9 3378528 3379837 Phco8g00427 8 3881695 3883435 ECH
Phco4g00894 4 7045351 7046704 Phco8g00427 8 3881695 3883435 PCT