Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00355 ATGAGTTCTACTTCTCATGCTTTCCCAATTCCATCATCGCTTTTGCCAAGTGATGCATCACCAGAGTGGAACAACAAAGCAGACAATGCATGGCAATTAACGGCAGCAACCTTAGTGGGCCTTCAGAGTGTTCCTGGGCTTGTCATCCTGTATGGCAGCATGGTTAAGAGAAAATGGGCTGTGAACTCGGCCTTCATGGCCCTCTACGCCTTTGCTTGTGTGCTCATTTGTTGGGTTTCATGGGCTCATGGCATGGCATTTGGGGCCCAGCTTTTGCCATTTGTGGGAAAGCCCAACCACGCTCTGGGCGGCAAGTTTCTGCTTGGGAAGTCAAGGACTGGGTACTTTCCAATGGCTGACTTCGTCTTCTATCAATTTGCTTTTGCAGCGATCACTGTTGTGTTGCTTGCAGGGTCTTTGCTCGGGAGAATGAACTTCTATGCGTGGATGTTGTTTGTTCCTTTGTGGCTTACGTTCTCTTACACAGTTGGTGCATTCAGCATCTGGGACAACTATGGCTTCCTTCAAGGAAAAATAATCGATTATGCTGGTGGCTTCGTCATTCATTTATCTTCTGGCATTGCAGGTTTCACAGCCGCTTATTGGGTTGGTCCAAGAATTTCCTATGACAGGCAAAACTTTCCACCAAATAACATAATTCACATGCTTGGAGGTGCAGGGTTTTTGTGGATGGGTTGGACAGGTTTTAATGGTGGAGCTACTTTCCAAGTGGGAGAAATTGCATCGTTGGCGATCTTCAATACCCATCTATGTACTGCTACAAGCCTACTGGTTTGGCTTACACTGGACATGATTGTATATACCAAGAGCTCAGTCACAGGGGCCGTACAGGGAATGATGACTGGCCTCGTTTGCATCACACCAGGTGCAGGTTTGGTAGATTCATGGGCGGCAGTGTTGATGGGAGCTTTGTCTGGTTCCGTTCCATGGTACACGATGATGGTGTTACACAAAAAATCAGCATTCTTTCAGAGTGTGGATGATACATTAGGAGTGTTTCACACTCATGCTGTGGCTGGTCTTCTAGGGGGTGTTCTTTCTGGCGTGTTTGCGAAACCGAAGCTTCTGAGAATAATGTACAGCGAAGATCAGCAATATGGCCCAGGCTTACTCTATAGCTTTTCTAAGGGGGAATCAGTGGGTGAAGGGTTTCGGCAAATATGGTACCAGTTTGTAGGAGCAGGGTTTATAATTGTTTGGAATGTGGTTGTTACTAGCCTGGTTTGTGTTCTTATAAGCCGCATTGTGGATCTTCGGATGCAAGAAGAGGACCTTGAGGTTGGTGATGATGCTGTTCATGGAGAAGAAGCATACGCATTGTGGGGTGATGGAGAGAAAATGAGGTTCCCTCTTCGTCTCCATATAAGTCCAACCATTCCTTCTCTGTGTCGCCGAAAGTTTTCTATTCCTCTCACCAGGAATCAAGAAGAGTAG 1455 0.466 MSSTSHAFPIPSSLLPSDASPEWNNKADNAWQLTAATLVGLQSVPGLVILYGSMVKRKWAVNSAFMALYAFACVLICWVSWAHGMAFGAQLLPFVGKPNHALGGKFLLGKSRTGYFPMADFVFYQFAFAAITVVLLAGSLLGRMNFYAWMLFVPLWLTFSYTVGAFSIWDNYGFLQGKIIDYAGGFVIHLSSGIAGFTAAYWVGPRISYDRQNFPPNNIIHMLGGAGFLWMGWTGFNGGATFQVGEIASLAIFNTHLCTATSLLVWLTLDMIVYTKSSVTGAVQGMMTGLVCITPGAGLVDSWAAVLMGALSGSVPWYTMMVLHKKSAFFQSVDDTLGVFHTHAVAGLLGGVLSGVFAKPKLLRIMYSEDQQYGPGLLYSFSKGESVGEGFRQIWYQFVGAGFIIVWNVVVTSLVCVLISRIVDLRMQEEDLEVGDDAVHGEEAYALWGDGEKMRFPLRLHISPTIPSLCRRKFSIPLTRNQEE 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00355 484 FunFam Ammonium transporter 13 448 - -
Phco8g00355 484 ProSitePatterns Ammonium transporters signature. 181 206 IPR018047 GO:0008519|GO:0016020|GO:0072488
Phco8g00355 484 PRINTS Rhesus blood group protein signature 220 238 IPR002229 GO:0005886
Phco8g00355 484 PRINTS Rhesus blood group protein signature 125 141 IPR002229 GO:0005886
Phco8g00355 484 PRINTS Rhesus blood group protein signature 251 273 IPR002229 GO:0005886
Phco8g00355 484 PRINTS Rhesus blood group protein signature 344 360 IPR002229 GO:0005886
Phco8g00355 484 PANTHER AMMONIUM TRANSPORTER MEP2 13 454 IPR001905 GO:0008519|GO:0016020|GO:0072488
Phco8g00355 484 SUPERFAMILY Ammonium transporter 23 426 - -
Phco8g00355 484 Pfam Ammonium Transporter Family 30 445 IPR024041 GO:0008519|GO:0016020|GO:0072488
Phco8g00355 484 Gene3D Ammonium transporter AmtB like domains 14 448 IPR029020 -
Phco8g00355 484 NCBIfam ammonium transporter 28 445 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00355 Phco-Chr8 3264410 3266079 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01889 4 37459083 37462890 Phco8g00355 8 3264410 3266079 PCT