Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00202 ATGGGAAGGGGTAGGGTTCAGCTCAAGAGGATAGAGAACAAGATCAATCGCCAGGTAACCTTCTCCAAAAGGAGAGCTGGGTTACTCAAGAAAGCACACGAGATCTCTGTGCTCTGTGACGCTGAGGTCGCTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAATATGCCACTGATTCTTGCATGGAGAAGATACTGGAACGCTATGAAAGGTATGCCTATGCAGAGAGACAACTTGTTGCCAATGATTCCGAATCACAGGGAAATTGGACCATTGAGTATACTAGACTCAAGGCAAAGATTGACCTGTTGCAGAGAAACCATAGGCACTATATGGGAGAAGATTTAGGATCAATGAGCCTGAAAGAGCTTCAGAGTCTGGAGCAGCAGTTAGATACTGCTCTCAAACAAATTCGTACCCGCAGAAACCAACTCATGTACGAGTCAATTTCTGAGCTTCAGAAGAAGGAGAAAGTGATACAGGAGCAGAATAACATGCTTGCAAAGAAGATCAAGGAGAAAGAAAAGGTTGCAGCACAGCAGGCACAGTGGGAGCATCCAAACCATGGAGTCAATGCATCTTTCTTGCTACCACAGCCACTTCTGAACATGGGTGGCAATTATCGTGAGGAAGCACAAGAAGTAGGGAGGAATGAACTTGACCTCACTCTGGAACCGTTGTATTCCTGCCACCTTGGATGCTTTTGA 711 0.4557 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERYERYAYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLGSMSLKELQSLEQQLDTALKQIRTRRNQLMYESISELQKKEKVIQEQNNMLAKKIKEKEKVAAQQAQWEHPNHGVNASFLLPQPLLNMGGNYREEAQEVGRNELDLTLEPLYSCHLGCF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00202 236 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Phco8g00202 236 Coils Coil 122 145 - -
Phco8g00202 236 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Phco8g00202 236 FunFam Floral homeotic protein APETALA 1 13 68 - -
Phco8g00202 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco8g00202 236 Coils Coil 151 181 - -
Phco8g00202 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco8g00202 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Phco8g00202 236 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Phco8g00202 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco8g00202 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco8g00202 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco8g00202 236 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco8g00202 236 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco8g00202 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phco8g00202 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00202 Phco-Chr8 1885227 1890589 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco8g00202 K-box 1.3e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02968 3 56034011 56044957 Phco8g00202 8 1885227 1890589 ECH
Phco8g00202 8 1885227 1890589 Phco8g00202 8 1885227 1890589 ECH