Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02878 ATGTCTTACACCACCACCACTTGTTTTCACTCTTGCTTCCTTCTCTTCTGCCTCCTCTCAGCTCTTTCATGTGTTTCCATGTTCTCTGGTATTGAGACAGGAGATTTAGAAAAAAGAGATGATTTGTTTCCACAGATTCTAAGAGACGAGGCAGTGGCGAGGCTTTATGAGCTTGGGAAGGTGAGTGATGGTAAAGGTTATTTGGAGAGGACATTCTTGAGTCCTGCGTCCATGAGGGCAATTAATCTTATTCGTAAATGGATGGAGGATGCTGGTTTGAGAACTTGGGTGGACCAAATGGGAAATGTACATGGTCGAGTCGACGGTGCAAACGCAAATGCTGAAGCTTTATTGATTGGTTCTCACATGGACACTGTTGTTGATGCTGGGATGTTTGATGGATCCCTAGGAATAGTCTCCGCAATATCTGCCTTGAAGGCCATGCATTTCAATGGAAAACTGGAAAAGCTAAAGCGCCCCGTTGAGGTGATTGCATTTAGTGATGAAGAGGGTGTCAGATTTCAAACTACGTTCTTGGGCAGTGGTGCTATAGCTGGTATTTTGCCTGCTACAACATTGGAGATATCTGATAAGAGGGATGTAATGATAAAAGATTTTCTCAAGGAGAACTCAATAGACATTACAGAGGAAAGTCTTTTAAAGCTCAAGTATGACCCAAAATCCGTTTGGGGTTATGTTGAGGTTCACATTGAGCAGGGTCCTGTGCTAGAACAAGTTGGTTTCCCACTTGGTGTGGTTAAAGGCATAGCTGGGCAGACGCGATTGAAGGTTACAGTTAGAGGATCACAAGGTCATGCTGGAACAGTGCCAATGTCCATGCGCCAGGATCCAATGGCAGCTGCCGCGGAACAAATTGTAGTCTTGGAAAGCCTCTGTAAACATCCTGAAGAATACCTTTCTTATGATGCTCATTGCAGTGATTCAACAGTGAAATCACTGTCAAGCTCACTTGTCTGTACTGTTGGAGAGATATCAACATGGCCAAGTGCCAGTAATGTCATTCCAGGCCAGGTTACATATACCGTGGACATTCGAGCAATTGATGACCTTGGACGTGAGGCTGTTATCTATGATTTATCAAAACAAATTTACCAAATATGTGACAAGCGTTCAGTATCCTGCATTATTGAACACAAGCATGATGCAGGTGCTGTGATTTGTGATTCTGATCTGAGTTCTCAGCTCAAGTCCGCAACTTATTCTGCACTAAAGAAGATGGAGGGTGACATTCAGGAAGAAGTGCCAACATTAATGAGTGGAGCAGGACATGATGCAATGGCAATATCTCACTTGACAAAGGTGGGAATGCTGTTTGTGCGATGTCGTGGAGGCATCAGTCACTCTCCACAAGAGCATGTGCTAGATAATGATGTCTGGGCAGCTGGTTTAGCAACCTTGTCATTTCTGGAAAATCTATCATAA 1443 0.438 MSYTTTTCFHSCFLLFCLLSALSCVSMFSGIETGDLEKRDDLFPQILRDEAVARLYELGKVSDGKGYLERTFLSPASMRAINLIRKWMEDAGLRTWVDQMGNVHGRVDGANANAEALLIGSHMDTVVDAGMFDGSLGIVSAISALKAMHFNGKLEKLKRPVEVIAFSDEEGVRFQTTFLGSGAIAGILPATTLEISDKRDVMIKDFLKENSIDITEESLLKLKYDPKSVWGYVEVHIEQGPVLEQVGFPLGVVKGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMAAAAEQIVVLESLCKHPEEYLSYDAHCSDSTVKSLSSSLVCTVGEISTWPSASNVIPGQVTYTVDIRAIDDLGREAVIYDLSKQIYQICDKRSVSCIIEHKHDAGAVICDSDLSSQLKSATYSALKKMEGDIQEEVPTLMSGAGHDAMAISHLTKVGMLFVRCRGGISHSPQEHVLDNDVWAAGLATLSFLENLS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02878 480 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 117 126 IPR001261 -
Phco7g02878 480 Gene3D Zn peptidases 64 469 - -
Phco7g02878 480 CDD M20_bAS 52 477 - -
Phco7g02878 480 PANTHER ALLANTOATE DEIMINASE-RELATED 16 478 IPR010158 GO:0016813
Phco7g02878 480 SUPERFAMILY Bacterial exopeptidase dimerisation domain 258 390 IPR036264 -
Phco7g02878 480 Pfam Peptidase family M20/M25/M40 118 468 IPR002933 GO:0016787
Phco7g02878 480 SUPERFAMILY Zn-dependent exopeptidases 43 479 - -
Phco7g02878 480 Gene3D - 258 390 - -
Phco7g02878 480 FunFam Allantoate deiminase 258 390 - -
Phco7g02878 480 NCBIfam hydantoinase/carbamoylase family amidase 52 472 IPR010158 GO:0016813
Phco7g02878 480 Pfam Peptidase dimerisation domain 258 369 IPR011650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02878 Phco-Chr7 47796618 47800531 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02878 7 47796618 47800531 Phco7g02878 7 47796618 47800531 ECH