Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02865 ATGGCGCCGGGAGTCGGAGGCCTGCAGCTCACTTCCCTCGCCGCCGCCTCTGATTCCGATGACCTCGAGGATGTGCGGCTCTTGGACTCCTACGACGAAGTCGATGCCGGAGCGAGGCGGATTCAGGTGACGGTCACCGGCATGACCTGCGCCGCTTGCTCCAATTCCGTCGAATCAGCTCTCAAATCACTCGACGGAGTTATCAGCGCCTCCGTTGCACTGCTTCAGAACAAAGCCGACGTAGTTTTCAACTCGGCTCTGCTCAAGGATGAAGACATTAAAAATGCAATTGAAGATGCTGGGTTTGAAGCAGACATATTACCTGAATCCAGTACTGTTGGAAAGATGCCACATGGAACCTTGGTGGGACAGTTCACAATTGGAGGTATGACATGTGCAGCATGTGTAAATTCCGTTGAAGGCATTTTAAGAAAGCTTCCAGGGGTCAAGAGGGCAGTGGTAGCTTTGGCTACTTCGTCAGGTGAAGTTGAATATGATTCCAGTGTAATTAGTAAAGATGATATAGTCAACGCGATTGAAGATTCCGGCTTTGATGCTTCATTTTTACAAAGCAATGAACAGGATAAAATAATTTTAGGCGTGGTTGGTGTGTATAGTGTGATTGATGGACAAGTTTTAGAGGGCATTATTAGCAGCATAAAAGGAGTCAGGCAGTTTCATTTTGACCAGATTTCAGGTGAATTGGATGTTCTGTTTGATCCTGAAGTTCTCAGTTCTAGATCATTAGTTGATGAAATCCAGGGGGGAAGCAATGGGAAGTTCAAATTACATGTTAGAAGCCCTTATATGAGAATGACTTCTAAAGGCGTTGAAGAGATCTCAACTATATTTCGGCGCTTTATCTCCAGTCTGTTTCTCAGTGTTCCTCTCTTCTTCGTGAAGGTAGTTTGTCCTCATATACCATTCATGTATTCCCTGTTACTTCGGCGATGTGGGCCTTTCCTCATGAGTGATTGGTTGAAATGGGCATTGGTGAGTCTTATCCAATTTGTGATCGGTAAGTGCTTCTATATTGCTGCTGGCAGAGCTCTTAGAAATGGTTCCACAAATATGGATGTCCTGGTTGCAGTGGGAACTACCGCTTCTTATGTTTATTCTGTTTGTGCTCTTCTATATGGTGCTCTTACTGGATTTTGGTCTCCAACTTACTTTGAAACAAGTGCTATGCTCATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCCAAGGGAAAGACATCTGATGCTATCAAGAAATTAGTAGAACTTGCTCCTGCAACAGCTTTACTAGTTGTCAAAGATAAAGGTGGTAAATGTATTGATGAAAGGGAAATTGATTGTTTGCTTGTTCAACCTGGGGACACATTGAAAGTTCTTCCTGGTGCAAAGATCCCTACTGATGGTATTGTTACCTGGGGCTCAAGTTATGTAAATGAAAGCATGGTAACTGGTGAATCTGTACCTATTTTGAAGGAGGTGAATGCTCCTGTTATTGGAGGCACAATAAATTTTCACGGTGTCCTTCATGTTCGAGCTTCCAAAGTAGGATCTGATACAGTTTTGAGCCAGATTATTAGTTTGGTTGAGACAGCGCAGATGTCCAAAGCTCCTATTCAGAAGTTTGCTGATTATGTGGCAAGCATATTTGTTCCTTTGGTCGTTTCTTTGGCATTATTGACATTATTGTGCTGGTACATTGCTGGGGCTATTGGAGCTTACCCAGAAGAGTGGCTGCCAGAAAATGGGAATCACTTTGTTTTTGCCCTGATGTTCTCAATATCTGTAGTAGTGATTGCATGTCCCTGTGCCGTTGGCTTGGCAACACCAACGGCTGTGATGGTGGCAACTGGGGTTGGGGCTAACAATGGAGTGTTAATTAAAGGTGGAGATGCATTGGAAAGGGCCCAGAGGGTTAAGTATGTGATATTTGATAAAACAGGCACTCTGACTCAGGGAAAAGCTACTGTTACTACTGCCAAGACATTCACAGGAATGGAACGTGGAGAATTTCTTAAATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCACTAGCAAATGCAATATTAGCATATGCACGCCATTTTCATTTCTTTGATGACTTGTCTGCTGATACCGGTACCGAGAATGATGCGAAAACTGGTTGGCTTTTTGACATCTCAGACTTCTCTGCTCTTCCCGGAAAAGGCGTTCAATGTTTCATAGATGGAAAGCTTATTTTGGTTGGTAACAGGAAGTTGATGGCGGAAAATGGCATACATATTTCAACAGAGGTGGAAAATTTTGTAGTAGAGCTTGAAGAAAGTGCAAAGACAGGGATACTGGTAGCATATAACGATATATTAACTGGAGTCTTGGGGATTGCGGACCCACTAAAGAGAGAAGCTTCTGTAGTCATAGAGGGTCTCCAGAAAATGGGTGTCACACCTGTTATGGTTACAGGAGATAACTGGAGAACAGCTCGTGCTGTTGCTAAGGAGGTTAACATATCAGATGTTAGGGCAGAGGTTATGCCAGCAGGAAAAGCTGATGTTGTTCGTTCATTCCAAAAAGATGGAAGCATAGTTGCAATGGTGGGTGATGGCATCAATGATTCTCCTGCATTAGCTGCAGCTGATGTTGGTATGGCTATCGGAGCTGGAACTGATATTGCAATTGAAGCCGCTGACTATGTGCTGATGAGAAATAACTTAGAAGATGTGATCACAGCCATTGATCTTTCCCGGAAGACCTTCTCTCGAATTCGATTGAATTATGTGTTTGCAATGGCTTACAATGTTGTGGCCATACCAGTTGCCGCTGGTGTTTTCTACCCTTCACTGAGGATCAAGCTACCACCGTGGGTTGCTGGTGCCTGCATGGCTCTCTCTTCTGTAAGTGTTGTATGCTCTTCTTTGCTTCTTAAAAGATATAGAAGACCCAGACTTACTGCAATACTTGAAATAATTGTAGAATAG 2964 0.4366 MAPGVGGLQLTSLAAASDSDDLEDVRLLDSYDEVDAGARRIQVTVTGMTCAACSNSVESALKSLDGVISASVALLQNKADVVFNSALLKDEDIKNAIEDAGFEADILPESSTVGKMPHGTLVGQFTIGGMTCAACVNSVEGILRKLPGVKRAVVALATSSGEVEYDSSVISKDDIVNAIEDSGFDASFLQSNEQDKIILGVVGVYSVIDGQVLEGIISSIKGVRQFHFDQISGELDVLFDPEVLSSRSLVDEIQGGSNGKFKLHVRSPYMRMTSKGVEEISTIFRRFISSLFLSVPLFFVKVVCPHIPFMYSLLLRRCGPFLMSDWLKWALVSLIQFVIGKCFYIAAGRALRNGSTNMDVLVAVGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGKCIDEREIDCLLVQPGDTLKVLPGAKIPTDGIVTWGSSYVNESMVTGESVPILKEVNAPVIGGTINFHGVLHVRASKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPLVVSLALLTLLCWYIAGAIGAYPEEWLPENGNHFVFALMFSISVVVIACPCAVGLATPTAVMVATGVGANNGVLIKGGDALERAQRVKYVIFDKTGTLTQGKATVTTAKTFTGMERGEFLKLVASAEASSEHPLANAILAYARHFHFFDDLSADTGTENDAKTGWLFDISDFSALPGKGVQCFIDGKLILVGNRKLMAENGIHISTEVENFVVELEESAKTGILVAYNDILTGVLGIADPLKREASVVIEGLQKMGVTPVMVTGDNWRTARAVAKEVNISDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVVAIPVAAGVFYPSLRIKLPPWVAGACMALSSVSVVCSSLLLKRYRRPRLTAILEIIVE 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02865 987 CDD P-type_ATPase_Cu-like 285 957 - -
Phco7g02865 987 ProSitePatterns E1-E2 ATPases phosphorylation site. 646 652 IPR018303 -
Phco7g02865 987 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 29 979 - -
Phco7g02865 987 FunFam Copper-exporting P-type ATPase 741 792 - -
Phco7g02865 987 SUPERFAMILY HMA, heavy metal-associated domain 37 108 IPR036163 GO:0046872
Phco7g02865 987 NCBIfam heavy metal translocating P-type ATPase 358 970 IPR027256 GO:0006812|GO:0016020|GO:0019829
Phco7g02865 987 ProSiteProfiles Heavy-metal-associated domain profile. 121 187 IPR006121 GO:0046872
Phco7g02865 987 SUPERFAMILY Calcium ATPase, transduction domain A 445 530 IPR008250 -
Phco7g02865 987 SFLD p-type atpase 626 913 IPR044492 -
Phco7g02865 987 PRINTS H+-transporting ATPase (proton pump) signature 833 849 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco7g02865 987 PRINTS H+-transporting ATPase (proton pump) signature 861 877 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco7g02865 987 PRINTS H+-transporting ATPase (proton pump) signature 892 917 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco7g02865 987 CDD HMA 124 187 IPR006121 GO:0046872
Phco7g02865 987 Pfam E1-E2 ATPase 428 623 - -
Phco7g02865 987 CDD HMA 42 104 IPR006121 GO:0046872
Phco7g02865 987 SUPERFAMILY Calcium ATPase, transmembrane domain M 378 935 IPR023298 -
Phco7g02865 987 FunFam Copper-exporting P-type ATPase A 120 189 - -
Phco7g02865 987 SUPERFAMILY HAD-like 643 967 IPR036412 -
Phco7g02865 987 Pfam Heavy-metal-associated domain 43 103 IPR006121 GO:0046872
Phco7g02865 987 Pfam Heavy-metal-associated domain 125 185 IPR006121 GO:0046872
Phco7g02865 987 Gene3D - 38 109 - -
Phco7g02865 987 ProSitePatterns Heavy-metal-associated domain. 45 75 IPR017969 GO:0046872
Phco7g02865 987 FunFam Probable copper-transporting ATPase HMA5 749 918 - -
Phco7g02865 987 SUPERFAMILY HMA, heavy metal-associated domain 118 193 IPR036163 GO:0046872
Phco7g02865 987 Gene3D - 123 188 - -
Phco7g02865 987 FunFam Copper-transporting ATPase RAN1 651 740 - -
Phco7g02865 987 ProSitePatterns Heavy-metal-associated domain. 127 156 IPR017969 GO:0046872
Phco7g02865 987 Gene3D - 741 792 IPR023299 GO:0000166
Phco7g02865 987 Gene3D - 651 740 IPR023299 GO:0000166
Phco7g02865 987 FunFam Copper-transporting ATPase 1, putative 412 534 - -
Phco7g02865 987 NCBIfam HAD-IC family P-type ATPase 397 665 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco7g02865 987 NCBIfam HAD-IC family P-type ATPase 732 942 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco7g02865 987 NCBIfam copper ion binding protein 41 104 IPR006122 GO:0005507
Phco7g02865 987 NCBIfam copper ion binding protein 124 186 IPR006122 GO:0005507
Phco7g02865 987 Pfam haloacid dehalogenase-like hydrolase 640 875 - -
Phco7g02865 987 Gene3D - 412 534 - -
Phco7g02865 987 ProSiteProfiles Heavy-metal-associated domain profile. 39 105 IPR006121 GO:0046872
Phco7g02865 987 Gene3D - 611 918 IPR023214 -
Phco7g02865 987 FunFam Copper-exporting P-type ATPase A 37 107 - -
Phco7g02865 987 SFLD Haloacid Dehalogenase 626 913 - -
Phco7g02865 987 PRINTS P-type cation-transporting ATPase superfamily signature 786 797 - -
Phco7g02865 987 PRINTS P-type cation-transporting ATPase superfamily signature 808 818 - -
Phco7g02865 987 PRINTS P-type cation-transporting ATPase superfamily signature 644 658 - -
Phco7g02865 987 PRINTS P-type cation-transporting ATPase superfamily signature 861 880 - -
Phco7g02865 987 PRINTS P-type cation-transporting ATPase superfamily signature 884 896 - -
Phco7g02865 987 PRINTS P-type cation-transporting ATPase superfamily signature 480 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02865 Phco-Chr7 47687654 47694732 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02865 7 47687654 47694732 Phco7g02865 7 47687654 47694732 ECH