Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02381 ATGGCATCTCAAGCAGAACCTAGCATGGATTACAAGCCCTACAGCTACTCCACACTGCTGAAATCCTTTGCAGACCAAACTGATCAGACCTACAAGCTCGAAGACTTTCTTTCTCGCTTAGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTCCTCACCAACGCTGTGGAGGCTTCAAGGCAGCAACTACAGACCTTCAGATCAAACCAAGGCACAAGGCCAGTTCTGGAAGAATTCATACCCATAAAGCATCCAAACTCTCAAGAAAGCACTGAGAAAGCATCAAACATGTCAGACAAGGCGAATTGGATGATATCAGCTCAATTATGGAGCCAGGCAAGCGAAGGAACCCAACCAAAATCCACAATTACATCACCAAAAGAAACTGCTGATACAGGGTTTAGCGTGAGCCCTAAGCTAGCCTTAGACAACAAACATAGGAATGGGGGAGCCTTTTTACCATTCTCAAAAGAGCGAAACTCGTGCCAAGGAGTAGGGGGAATTCCTGAGTTAGCCCTTGCCTCTTCTGAGAATGAAATGGAGGTGAAGAACAGTAAAGATGCAGAGAAATTTTCCAAAAGGGAGAATTCAGGCAAAGGAGGGAGTTGTGAAGTAATTGTTGATCAGGGAAAAAGTGCTGCAACTGGAACTGAGTCACAAACAACTCATGCTACAACCACCACAACGAACACTAATAGCCAAACTCATAGGAAAGCAAGAAGGTGTTGGTCACCGGACTTGCACCGTCGATTTGTTAATGCTCTTCAAATGCTTGGTGGATCTCAAGTGGCCACTCCAAAACAGATCAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCACACTAGAAGACCCAGCCCAGGCCTACATGCAGGAGAACCAACACCACGACTTGTAGTGCTGGGAGGAATTTGGGTGCCACCGGAATATGCCACTGCTCCGGCACACTCCGGTGGCCCCAGCCTCTATGGCCCACATCCTACCTCACACATGCCACCGCCACACTACTGTGCAGGCACTCCTGTGTCCCAAGAGTTCTACAACTTAGCTCCATCACTGTCGTTGCCACCACCACAAGACCACAGTCTCCATCACCACCATTTTCACATGTACAAGACAGCACCACAGACCCAAAGTTCTTCAGAATCAGATGTTCGGAGCGGTGGCGGCCGATCTGAGAGCATTGAGGATGGGAAGTCGGAGAGTGGTAGCTGGAAAGGAGAGAATGGAGAGAGGAAAGGGTTGGCAGCACTAAGAGATCAAGAAGGGGAAGACAGCACAGGGAGTGAGATCACTCTTAGATTCTAG 1371 0.4821 MASQAEPSMDYKPYSYSTLLKSFADQTDQTYKLEDFLSRLEEERLKIDAFKRELPLCMQLLTNAVEASRQQLQTFRSNQGTRPVLEEFIPIKHPNSQESTEKASNMSDKANWMISAQLWSQASEGTQPKSTITSPKETADTGFSVSPKLALDNKHRNGGAFLPFSKERNSCQGVGGIPELALASSENEMEVKNSKDAEKFSKRENSGKGGSCEVIVDQGKSAATGTESQTTHATTTTTNTNSQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPGLHAGEPTPRLVVLGGIWVPPEYATAPAHSGGPSLYGPHPTSHMPPPHYCAGTPVSQEFYNLAPSLSLPPPQDHSLHHHHFHMYKTAPQTQSSSESDVRSGGGRSESIEDGKSESGSWKGENGERKGLAALRDQEGEDSTGSEITLRF 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02381 456 MobiDBLite consensus disorder prediction 122 141 - -
Phco7g02381 456 MobiDBLite consensus disorder prediction 410 450 - -
Phco7g02381 456 NCBIfam myb-like DNA-binding domain, SHAQKYF class 247 302 IPR006447 GO:0003677
Phco7g02381 456 Coils Coil 33 53 - -
Phco7g02381 456 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 244 304 IPR017930 -
Phco7g02381 456 MobiDBLite consensus disorder prediction 394 409 - -
Phco7g02381 456 MobiDBLite consensus disorder prediction 221 247 - -
Phco7g02381 456 MobiDBLite consensus disorder prediction 394 456 - -
Phco7g02381 456 Gene3D - 246 304 - -
Phco7g02381 456 MobiDBLite consensus disorder prediction 189 206 - -
Phco7g02381 456 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 427 IPR044787 GO:0003700|GO:0006355
Phco7g02381 456 FunFam Myb family transcription factor 246 304 - -
Phco7g02381 456 MobiDBLite consensus disorder prediction 122 154 - -
Phco7g02381 456 Pfam Myb-like DNA-binding domain 249 300 IPR001005 -
Phco7g02381 456 SUPERFAMILY Homeodomain-like 244 305 IPR009057 -
Phco7g02381 456 MobiDBLite consensus disorder prediction 185 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02381 Phco-Chr7 41666886 41669200 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco7g02381 Myb_DNA-binding 9.8e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02381 7 41666886 41669200 Phco7g02381 7 41666886 41669200 ECH
Phco8g01516 8 15618273 15620644 Phco7g02381 7 41666886 41669200 PCT