Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g00529 | ATGCTAAACGTAAAAGTAGTGCAACTTAAGAAAATTCAGGTGCCTATAAGGGTTGCATTGGAATGCCATTCATCCCTTGTAACTCAAGAAAAATCTCAGATACTGTTTCAAAAGTGGGATTCGACAATGAAACCAAGCCAGCTGGATGTTGAACAACGCAGTGCCATGGAACCCCACGTCAAACGCCATATATTTGTTGGGGTGTCTGCTTTTGTCTCCTGCCTCCCACATTTCACCACCCCCTTTATCCTTATCTCCTCTTCTTCATCGTTTTGCTCTTTCCTTACCAAGAAAAATCTACTTAAGCCACACACAGGGATCATTTGCACCTTGCTAAGGGGAGAAAATAGGGAAAATATGGCATTTGCAGGAACAACTCAGAAGTGCATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAGTTGACAGCGGATAATCGAGTGTTCCACAAGGCTTGCTTCAGATGCCACCACTGCAAAGGAACACTCAAGCTTAGCAACTATAACTCTTTTGAGGGAGTTCTTTACTGCAAGCCACACTTCGATCAACTGTTCAAAAGAACTGGTAGTCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGACAAGACTGGCGAAGAGAAACCTGCAGCAACAAAAGTCTTGAATATGTTTGGTGGAACCAGAGATAAATGTGCTGGTTGTCAGAAAACAGTGTATCCCACCGAAAAGGTCACTGTGAATGGAACTCCTTATCACAAGAGTTGTTTCAAATGCACTCATGGAGGGTGTGTTATTAGTCCCTCTAATTACATTGCACACGATGGCAAACTCTACTGCAAGCACCACCACATCCAACTGATCAAGGAGAAGGGAAATTTAAGCCAGCTTGAAGGTGACCATGAGAAGAGTGTAATTCAAGAGAAAACCAACGGTGAAGTAGTTGCAGCTGAGACATGA | 948 | 0.4293 | MLNVKVVQLKKIQVPIRVALECHSSLVTQEKSQILFQKWDSTMKPSQLDVEQRSAMEPHVKRHIFVGVSAFVSCLPHFTTPFILISSSSSFCSFLTKKNLLKPHTGIICTLLRGENRENMAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKIAKPDKTGEEKPAATKVLNMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCTHGGCVISPSNYIAHDGKLYCKHHHIQLIKEKGNLSQLEGDHEKSVIQEKTNGEVVAAET | 315 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g00529 | 315 | CDD | LIM2_SF3 | 228 | 288 | - | - | |
| Phco7g00529 | 315 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 220 | 253 | - | - | |
| Phco7g00529 | 315 | ProSiteProfiles | LIM domain profile. | 226 | 286 | IPR001781 | - | |
| Phco7g00529 | 315 | FunFam | LIM domain and actin-binding 1 | 123 | 193 | - | - | |
| Phco7g00529 | 315 | Gene3D | Cysteine Rich Protein | 223 | 292 | - | - | |
| Phco7g00529 | 315 | Gene3D | Cysteine Rich Protein | 123 | 193 | - | - | |
| Phco7g00529 | 315 | SMART | lim_4 | 227 | 279 | IPR001781 | - | |
| Phco7g00529 | 315 | SMART | lim_4 | 128 | 180 | IPR001781 | - | |
| Phco7g00529 | 315 | PANTHER | OS06G0237300 PROTEIN | 71 | 212 | - | - | |
| Phco7g00529 | 315 | Pfam | LIM domain | 129 | 183 | IPR001781 | - | |
| Phco7g00529 | 315 | Pfam | LIM domain | 228 | 282 | IPR001781 | - | |
| Phco7g00529 | 315 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 254 | 293 | - | - | |
| Phco7g00529 | 315 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 122 | 154 | - | - | |
| Phco7g00529 | 315 | CDD | LIM1_SF3 | 125 | 187 | - | - | |
| Phco7g00529 | 315 | ProSiteProfiles | LIM domain profile. | 127 | 187 | IPR001781 | - | |
| Phco7g00529 | 315 | ProSitePatterns | LIM zinc-binding domain signature. | 129 | 163 | IPR001781 | - | |
| Phco7g00529 | 315 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 155 | 195 | - | - | |
| Phco7g00529 | 315 | FunFam | LIM domain and actin-binding 1 | 222 | 292 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco7g00529 | Phco-Chr7 | 3893868 | 3896581 | Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Phco7g00529 | LIM | 6e-13 | CL0167 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco7g00529 | 7 | 3893868 | 3896581 | Phco7g00529 | 7 | 3893868 | 3896581 | ECH | |
| Phco2g00335 | 2 | 2789006 | 2790370 | Phco7g00529 | 7 | 3893868 | 3896581 | PCT |