Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00525 ATGTTGTGCGCTTGTTCTTCCGGTGAGCAGTTCAAATTTGAAGAGCCGCCGCAGTCGCCGGACTCCCTCGCCACCAGGGATTTCTCCGCAAGCGGACTCTCTTCCAGGACCACCGGGGAGTGGGAACCTAAATTCGATGAAGCGCAAGTAGAACAAGCTGAATCTACTCTTAAAGAAGCTCTTTCCTTGAACTATGAGGAGGCTAGGGCTTTGTTGGGGAGACTTGAATACCAAAGAGGGAATTTCGATGCTGCACTTCAAGTGTTTCAGGGTATAGACATCAAGGGTTTGACCCTGAGAATGATCAAGGCTATTGCTGAAAGAACCAAGCAGAGGAAACCATGTTCCAAGGCAGATATCGTTGTTTCAAATGTGATGTCATTGCACTCTGTTAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCAAGGTCATTGGAGGAGCTTGGGGAATGCATTGAGGCTGCAAAGGAGTGCAGAATAATTCTTGATACAGTTGAATCTGCCCTTCCTAATGGAATACCTGAGGGTATTGGCGAAGATTGTAAGTTGAAAGAGATGTTTCATAAAGCATTGGAATTACTTCCAAGGCTTTGGATCAAAGCAGGATTTCTGGATGAAGCTGTAGTTGCGTATCGTCGTGCTCTGGTCAAGCCATGGAGTTTGGAGCCACAAAGGTTGGCTGCTGTACAAAAAGATTTAGCTACGACACTACTCTATGGCGGTGTTGAAGTTAGCCTATCCTCTCAGTTGCAGGTGTGGGGTGAGACAACACCTACCAACAGTGTTGAAGAAGCGATACATTTGCTAGTAATACTCATGAGCAAGGTGGCAATTGGGGAAATAGACTGGGATTCTGAAATAATGGATCATCTTACGTTTGCACTTTCAGTCACTGGGATGTTTGAGCTACTTGCTGATCATGTAGAGCAGATCCTTCCAGGTATCTATAGTCGGGCTGAGAGGTGGTACTTTCTTGCTCTTTGTTTTAGTGCAGCAGGACATAATGAGGTGGCATTGAACCTTTTAAGGAAGGCTTGTGGGAGTTCTGAAGCAAACCATAAACCGCATTTTCCTTCATTTTTGCTTGGAGCAAAACTCTGTTCCCTTGATCCTCGCCATGCTCATGAAGGCATTAACTTTTCACGTAAAGTTATTGAGCTAGCTAAGCATCAAAATGAGCATTTTCTGAGTCAAGGCCATACATTTCTAGGAATCTGCTATGGTGCTGCAGCCAGAATTTCTGTACTGGATTCTGAAAGAAGTATATTTGAAAGAGAGTCTTTGGACTCTCTAAACTGTGCTGCTGTAAATGGAAATGATGACCTGGAAGCAATATTCAGCCTTGGACTGGAAAATGCAATCCAAAGGAATCTGAATGCAGCTTACAACAACATAATGATGTTCTCAGACATGACTGTTGGCAGTTCGAGGGGTTGGCAGCTGTTAGCACTTATAGTATCTGCACAGCATCGGTTTAAGGATGCAGAAACTGTAGTTGATTTTGCTTTAGATGAGGCCGGGGGGATGGATCAACTTGATCTTCTGAGATTGAAAGCTATACTTCAAATTGCTCAACAGCAACCCAGGCAAGCAATAGAGACATATAGGATCTTGCTTGCACTAATTCAAGCAAAAAAGGAGCTTTGGCTTCAAGATAACAACATTGATCGAGAACAAGCATGCAGGCAAGAGCTGGCATTAACAGAAAAGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACAATTTATACAGATATCGGTTCCTTGATCGATGCAAAAACTTGTGTTGACAAGGCCCAATTGATAGAGTTTTTTTCTCCAAGAAGTTGGCATATTACAGGGTTGATGCTTGAAGCTCAATCATTATACAGAGAGGCATTTATTTCCTTTTCAATATCATTGTCAGTAGAACCAGATTACGTTCCCAGTATCATTTCTACTGCAGAATTGTTGACGAAACTTGGTATGCAATCACTTCCAATTGCAAGAAGTTTTTTAATGAATGCTTTACGATTAGAACCTACAAACCACGATGCTTGGTTCAACCTTGGATTGGTTTCGAAAATGGAAGGTTCATTACAGCAAGCAGCAGAGTTCTTTCAAGCTGCTTATGAGCTGAAGCTTTCTGCTCCAGTGCAAAAATTTAAGTAA 2154 0.428 MLCACSSGEQFKFEEPPQSPDSLATRDFSASGLSSRTTGEWEPKFDEAQVEQAESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKGLTLRMIKAIAERTKQRKPCSKADIVVSNVMSLHSVSLLLEAILLKARSLEELGECIEAAKECRIILDTVESALPNGIPEGIGEDCKLKEMFHKALELLPRLWIKAGFLDEAVVAYRRALVKPWSLEPQRLAAVQKDLATTLLYGGVEVSLSSQLQVWGETTPTNSVEEAIHLLVILMSKVAIGEIDWDSEIMDHLTFALSVTGMFELLADHVEQILPGIYSRAERWYFLALCFSAAGHNEVALNLLRKACGSSEANHKPHFPSFLLGAKLCSLDPRHAHEGINFSRKVIELAKHQNEHFLSQGHTFLGICYGAAARISVLDSERSIFERESLDSLNCAAVNGNDDLEAIFSLGLENAIQRNLNAAYNNIMMFSDMTVGSSRGWQLLALIVSAQHRFKDAETVVDFALDEAGGMDQLDLLRLKAILQIAQQQPRQAIETYRILLALIQAKKELWLQDNNIDREQACRQELALTEKKLEMEAWQDLATIYTDIGSLIDAKTCVDKAQLIEFFSPRSWHITGLMLEAQSLYREAFISFSISLSVEPDYVPSIISTAELLTKLGMQSLPIARSFLMNALRLEPTNHDAWFNLGLVSKMEGSLQQAAEFFQAAYELKLSAPVQKFK 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00525 717 PANTHER PROTEIN NPG1 1 717 IPR043376 -
Phco7g00525 717 SUPERFAMILY TPR-like 427 600 IPR011990 GO:0005515
Phco7g00525 717 SMART tpr_5 476 509 IPR019734 GO:0005515
Phco7g00525 717 SMART tpr_5 319 352 IPR019734 GO:0005515
Phco7g00525 717 SMART tpr_5 512 545 IPR019734 GO:0005515
Phco7g00525 717 SMART tpr_5 608 641 IPR019734 GO:0005515
Phco7g00525 717 SMART tpr_5 678 711 IPR019734 GO:0005515
Phco7g00525 717 Gene3D Tetratricopeptide repeat domain 551 659 IPR011990 GO:0005515
Phco7g00525 717 MobiDBLite consensus disorder prediction 22 38 - -
Phco7g00525 717 Gene3D Tetratricopeptide repeat domain 259 550 IPR011990 GO:0005515
Phco7g00525 717 Gene3D Tetratricopeptide repeat domain 39 250 IPR011990 GO:0005515
Phco7g00525 717 Gene3D Tetratricopeptide repeat domain 660 713 IPR011990 GO:0005515
Phco7g00525 717 SUPERFAMILY TPR-like 565 708 IPR011990 GO:0005515
Phco7g00525 717 ProSiteProfiles TPR repeat profile. 678 711 IPR019734 GO:0005515
Phco7g00525 717 SUPERFAMILY TPR-like 49 391 IPR011990 GO:0005515
Phco7g00525 717 MobiDBLite consensus disorder prediction 1 43 - -
Phco7g00525 717 Pfam Tetratricopeptide repeat 48 90 - -
Phco7g00525 717 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00525 Phco-Chr7 3875954 3879242 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00525 7 3875954 3879242 Phco7g00525 7 3875954 3879242 ECH
Phco2g00331 2 2759286 2762275 Phco7g00525 7 3875954 3879242 PCT