Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00519 ATGGATACGGTCAACATTGAGTTGAATAGGTGCACGTGTCCCTCAAGAGGAGACCGCCACCCATATATTTGGCACCCCGTTCCTTCTTTTGCCTTTTCTTTTTCTTCTCAAACTCTTCTTCTTTTTCTTCTTCTTCTTCATTCACATACTCACCGTGCAGGGAGGGCCATGTTAACCACCGTCGAAAACGACCACTCCTTCTCCAATTTCAGCGACTGCAACAGCGACAGGTCTGCTGAATTCTCCACACCGTCTTCCGAGACCCGCCGCCTCCTCATCGCCTGCTCCGCCGACAATTCCGACGAATTCATTCGTCACCTCCTTCACAACCTCCATTCCTGTTCCATCGAAGAGCAGAAACAAGCCACCATGGAAATCAGGCTACTCGCCAAGAACAAGCAAGAGAACCGCGTCAAGATCGCAAAAGCCGGCGCCATTCAACCCTTGGTTTCACTTCTATCGTCCTCGTCAAACCTTCAGCTGCAGGAGTACGTGGTGACCGCGATTCTCAATCTCTCGCTCTGCGACGAGAACAAAGAGCTGATCAATTCCACAGGAGCGGTGAAGCCTCTTGTGGGAGCGCTGGAGACGGGGACGCCAACGGCGAAGGAGAACGCGGCGTGCGCACTGCTCCGGCTCTCGCAGAGAGAGGAGGACAAGGTTGCGATAGGGAGGGCGGGGGCAATTCCGCCTCTGGTGAAGCTTCTAGAAGGTGGGGGGTTGCGCGGGAAGAAGGACGCGGCGACGGCGCTCTACGCGATGTGTTCGGCGAAGGAGAACAAGGTGAGGGCGGTGAGGGCGGGGGTTATGAGGGCGCTGGTGGAGCTGATGGCGGACTTGGGGTCGAGCATGGTGGACAAGGCGGTGTACGTGGTGAGCGTGGTGGTTGGGGTGGCGGAGGGGAGGGCGGCGCTGGTTGATGAAGGGGGGATTCCGGTGCTGGTGGAGATAGTGGAGGTGGGGACGCAGAGGCAGAAGGAGATCGCGGTTGGGGTTCTATTGAAGATTTGCGAGGAGAGTTGGGTGTACCGTACTATGGTGGCCCGCGAAGGAGCCATTCCACCCCTCGTTGCTTTCTCACACTCCCACTCCCACTCCAATCTCCCCCGACACAAGAAACTAATAGAGCTTTTACGGCAACCAAGATCCGGCGATGGCGCTGCTCGTACCTAG 1173 0.5686 MDTVNIELNRCTCPSRGDRHPYIWHPVPSFAFSFSSQTLLLFLLLLHSHTHRAGRAMLTTVENDHSFSNFSDCNSDRSAEFSTPSSETRRLLIACSADNSDEFIRHLLHNLHSCSIEEQKQATMEIRLLAKNKQENRVKIAKAGAIQPLVSLLSSSSNLQLQEYVVTAILNLSLCDENKELINSTGAVKPLVGALETGTPTAKENAACALLRLSQREEDKVAIGRAGAIPPLVKLLEGGGLRGKKDAATALYAMCSAKENKVRAVRAGVMRALVELMADLGSSMVDKAVYVVSVVVGVAEGRAALVDEGGIPVLVEIVEVGTQRQKEIAVGVLLKICEESWVYRTMVAREGAIPPLVAFSHSHSHSNLPRHKKLIELLRQPRSGDGAART 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00519 390 SMART arm_5 175 215 IPR000225 GO:0005515
Phco7g00519 390 SMART arm_5 216 256 IPR000225 GO:0005515
Phco7g00519 390 SMART arm_5 133 174 IPR000225 GO:0005515
Phco7g00519 390 SMART arm_5 298 338 IPR000225 GO:0005515
Phco7g00519 390 SMART arm_5 257 297 IPR000225 GO:0005515
Phco7g00519 390 FunFam U-box domain-containing protein 4 219 387 - -
Phco7g00519 390 Gene3D - 244 381 IPR011989 -
Phco7g00519 390 Gene3D - 70 240 IPR011989 -
Phco7g00519 390 PANTHER U BOX DOMAIN-CONTAINING 103 362 - -
Phco7g00519 390 Pfam Armadillo/beta-catenin-like repeat 176 214 IPR000225 GO:0005515
Phco7g00519 390 Pfam Armadillo/beta-catenin-like repeat 218 252 IPR000225 GO:0005515
Phco7g00519 390 Pfam Armadillo/beta-catenin-like repeat 134 173 IPR000225 GO:0005515
Phco7g00519 390 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 187 IPR000225 GO:0005515
Phco7g00519 390 SUPERFAMILY ARM repeat 100 366 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00519 Phco-Chr7 3808544 3809883 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00327 2 2703362 2704866 Phco7g00519 7 3808544 3809883 PCT