Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00515 ATGTTAATGTTTGCTTTCTTGGTACATGAATCTGAATCGTTTTTGGGTGAACCAATGTTGTTTCTTGTTGACAATGGTAGGGCAAATCTAGAAACCGAGGAAAAATGCACTTGTCACGCAACTTCCCCAAATCCTCACCTCCTTATAAATCCCCCACACCCCCAATTCTCCACTCTCACACTTCAACTCCTAACTCAGAATCAACCACAGCCACAAAAACTTCTCTTTCTCCCCTCACACAACACCACGCGTCAAATTCAAATGGCTCTCGAAGCTCTTCAATCACCCACCACCGCCAACCCATCGTTCAGTCCCTTTGAAGAAGCCAATCTCAGTTACTTAGACACACCTTGGGCCAAGCGAAAGCGTTCTAAGCGTGCCCGCATGGACCAACAACTGCAACTACAACACCCCTCCTGCACCGAGGAGGAGTACCTAGCTCTCTGTCTCATCATGCTCGCTCGCGGCGGCTCTCACCGTGCCACCGCCATCCCCACCACCTCCAAACCTGCTCTCTCAGACAACAACTCGGCGCCGCTCTCCGCCGCGAAACTCACCTACAAATGCTCCGTCTGCAACAAGGCCTTCTCCTCTTACCAAGCCCTCGGCGGACACAAGGCCAGCCACAGGAAATTAGCTGGCGCCGCCGAAGATCAGCCTGCCTCCTCCAGCGTGACCACGACTTCTGCGTCCAACGGCGGAGGTAGGACCCATGAGTGCTCCATATGCCACAAAACGTTCCCGACAGGACAGGCCTTGGGAGGACACAAACGCTGTCACTACGAAGGCGGCGGCGGTAACAGCGCCGTAACCGCCTCGGAAGGTGTGGGGTCCACTCACACAGGAAGCCACCGCGATTTCGATCTCAACCTCCCGGCTTTTCCGGACTTTCCAACGAGGTTCTTCACGGATGAGGAGGTTTCCAGCCCCCATCCATCCAAGAAGCCCCGTCTCCATTTGACTATACCCAAGATTGAAATCCCTCGGTACTAA 993 0.5398 MLMFAFLVHESESFLGEPMLFLVDNGRANLETEEKCTCHATSPNPHLLINPPHPQFSTLTLQLLTQNQPQPQKLLFLPSHNTTRQIQMALEALQSPTTANPSFSPFEEANLSYLDTPWAKRKRSKRARMDQQLQLQHPSCTEEEYLALCLIMLARGGSHRATAIPTTSKPALSDNNSAPLSAAKLTYKCSVCNKAFSSYQALGGHKASHRKLAGAAEDQPASSSVTTTSASNGGGRTHECSICHKTFPTGQALGGHKRCHYEGGGGNSAVTASEGVGSTHTGSHRDFDLNLPAFPDFPTRFFTDEEVSSPHPSKKPRLHLTIPKIEIPRY 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00515 330 MobiDBLite consensus disorder prediction 211 234 - -
Phco7g00515 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 209 IPR013087 -
Phco7g00515 330 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 122 293 IPR044653 GO:0003700
Phco7g00515 330 Gene3D Classic Zinc Finger 185 260 - -
Phco7g00515 330 ProSitePatterns Zinc finger C2H2 type domain signature. 240 260 IPR013087 -
Phco7g00515 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 238 260 IPR013087 -
Phco7g00515 330 ProSitePatterns Zinc finger C2H2 type domain signature. 189 209 IPR013087 -
Phco7g00515 330 MobiDBLite consensus disorder prediction 219 234 - -
Phco7g00515 330 Pfam C2H2-type zinc finger 238 261 - -
Phco7g00515 330 Pfam C2H2-type zinc finger 187 211 - -
Phco7g00515 330 SMART c2h2final6 187 209 IPR013087 -
Phco7g00515 330 SMART c2h2final6 238 260 IPR013087 -
Phco7g00515 330 SUPERFAMILY beta-beta-alpha zinc fingers 186 260 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00515 Phco-Chr7 3762662 3766318 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco7g00515 zf-C2H2_6 3.4e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00515 7 3762662 3766318 Phco7g00515 7 3762662 3766318 ECH
Phco2g00321 2 2629060 2629770 Phco7g00515 7 3762662 3766318 PCT