Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00489 ATGGGCGCGCCCAGAGCGATAAACACACCGTTCCTAACTGCTGTAACCGGTTATCTCCACCGGTTCCACAACTCATCCTTATCACTTTCGCATTTTTCCTTCTCCCCCTGTCTCTCTCTATATATATCCCCTCCCCCTCCCTCTGCCAACCTCCTTTGTCCACTTCCCATCATTTTTGTACTTATTCTTATTCATTATTATAGTAACTTCGAGCTGAAAATTATTAATTCCATGGCTTCGGCGAAGGACATGGATCGGATAAAAGGGCCATGGAGCCCCGAAGAGGACGAAGCCTTGCGGAGGTTGGTTCAGATTTACGGGCCCAGAAACTGGTCCCTCATAAGCAAATCCATTCCGGGTCGGTCTGGGAAATCGTGTCGGTTGCGGTGGTGCAATCAGCTGTCGCCCGAGGTTGAGCACCGGCCTTTCACGGCGGAGGAAGACGAAAGGATCGTGAAGGCGCACGCCAGGTTCGGGAACAAGTGGGCCACCATCGCTCGCTTCCTCAACGGTCGCACCGACAACGCCATCAAGAACCATTGGAATTCCACGCTAAAGAGGAAATGCTCCGAACCTCCCTCCGACCCTCGGCCTCTGAAAAGAGTCGCCAGTGGTTCGGATAGCCCATCCGGATCCGATTTGAGCGATTCGGGTTTACCCGCTACTTTTCCAATCCCCATTTACCAACCTCTTGCTGGGAGCGTAAGCGTGAGCCTCGTGCCCTCTACCCTGCTTGCGGAAACTGCGTCTTCTTCTGCAACTGATATCGCCACGTTATTGAGTCTGTCTCCACCTGGATCCAATTCGTGCAATGGAGCTAGCAATGGGCCTGGGACGAACGAGGAGCCCAGTTGCGAGCGGAGGCAGGAGTTGAGGGTTGGTTCGGAGCAGTTGTTGAGCGAAGAGTTGTTGAAGGTGATGCAAGATATGATACGAGTGGAGGTGAGGAATTACATGTCTGGATTGGAACGTAACGGGGTGTTTATGCAAAACGATGCCATTGGAAACGCGGTTCTAAAGAGGATGGGAATTGGAATGCTCGAATAG 1047 0.5234 MGAPRAINTPFLTAVTGYLHRFHNSSLSLSHFSFSPCLSLYISPPPPSANLLCPLPIIFVLILIHYYSNFELKIINSMASAKDMDRIKGPWSPEEDEALRRLVQIYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTAEEDERIVKAHARFGNKWATIARFLNGRTDNAIKNHWNSTLKRKCSEPPSDPRPLKRVASGSDSPSGSDLSDSGLPATFPIPIYQPLAGSVSVSLVPSTLLAETASSSATDIATLLSLSPPGSNSCNGASNGPGTNEEPSCERRQELRVGSEQLLSEELLKVMQDMIRVEVRNYMSGLERNGVFMQNDAIGNAVLKRMGIGMLE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00489 348 Gene3D - 141 204 - -
Phco7g00489 348 CDD SANT 142 185 IPR001005 -
Phco7g00489 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 138 IPR017930 -
Phco7g00489 348 ProSiteProfiles Myb-like domain profile. 83 134 IPR001005 -
Phco7g00489 348 PANTHER MYB PROTEIN-RELATED 88 247 - -
Phco7g00489 348 MobiDBLite consensus disorder prediction 264 282 - -
Phco7g00489 348 SMART sant 87 136 IPR001005 -
Phco7g00489 348 SMART sant 139 187 IPR001005 -
Phco7g00489 348 MobiDBLite consensus disorder prediction 264 285 - -
Phco7g00489 348 Gene3D - 87 139 - -
Phco7g00489 348 MobiDBLite consensus disorder prediction 183 216 - -
Phco7g00489 348 CDD SANT 90 132 IPR001005 -
Phco7g00489 348 Pfam Myb-like DNA-binding domain 91 150 - -
Phco7g00489 348 FunFam MYB transcription factor 88 139 - -
Phco7g00489 348 SUPERFAMILY Homeodomain-like 85 181 IPR009057 -
Phco7g00489 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 189 IPR017930 -
Phco7g00489 348 ProSiteProfiles Myb-like domain profile. 135 185 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00489 Phco-Chr7 3583009 3584149 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco7g00489 Myb_DNA-bind_6 6.2e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00489 7 3583009 3584149 Phco4g01154 4 9499515 9500698 ECH
Phco7g00489 7 3583009 3584149 Phco8g01010 8 10515293 10516159 ECH
Phco7g00489 7 3583009 3584149 Phco7g00489 7 3583009 3584149 ECH
Phco2g00301 2 2458475 2459305 Phco7g00489 7 3583009 3584149 PCT