Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00482 ATGCCCATTTCATTCCGTTCCTGCAATCACCAAATATCGAAACAAAAAACGAAAATGGGGACAAGTAGATCTTCCACACCCACCATCCTCATCGTGTTCTTCACGGCCTTGGCAGTGTCGTCCGCGTTGGACATGTCCATAATCTCGTACGACAGAACCACCCACGCCGACAAGACAGAGCGGAGGAGCGACGAGGAGGTGAGGAGCATATACGAGGAGTGGCTGGTGAAGCATGGAAAGGTTCCCAGTACCCTCGCCCTGAAAGAGAAGAGGTTTCAGATTTTCAAAGACAACCTGAAGTTTATCGACGACCACAATGCTGAAAACAGGACATACAAGGTTGGACTGAACCGGTTCGCTGATCTTAGAAACGATGAATACCGGTCGAAGTACCTGAGAACCAAGATTAACCCTCTCAGGATGATGGCGAAGCCAAGTAACCGTTACGCTCCGCGCGTGGATGACAACTTGCCGGAATCTGTTGATTGGAGGAAAGAAGGTGCGGTGGTGAGAGTGAAAGACCAGGCAGAGTGCGAGGGTTGCTGGGCATTCTCAGCAATTGCCGCAGTGGAAGGGATTAACAAGATAGTAACAGGCAATCTAACTGCATTGTCAGAGCAAGAACTGTTGGATTGTGACAGAACAGTAAACGCAGGTTGTAGTGGTGGACTTGTTGATTACGCCTTTGAGTTTATTATAAACAACGCTGGCATTGACACTGAAGATGATTACCCCTTTCAAGGTGCTGATGCCATATGTGATCAAAATAAGCAAAATGCGAAAGCTGTTACAATTGATGGTTATGAACGTGTTCCTGCCTATGACGAGTTAGCCTTGAAAAAGGCAGTAGCAAATCAACCAGTGAGTGTTGCCATTGAAGCATATGGCAGAGAGTTTCAGTTATATGAATCGGGTATATTCAGAGGAGCATGCGGTACTTTAATAGATCATGGTGTTGCAGCTGTTGGTTATGGTGCAGAAAATGGAACTGAGTATTGGATTGTGAAGAATTCATGGGGTGAGAAGTGGGGAGAGGAAGGTTATGTAAGAATGGAACGCAATATAGCAGAAGACAGTGCAGGGAAGTGCGGAATTGCGATCCTGTCATTCTATCCCACAAAGAGTGGCCAAAATCTCTCAAACCCTGTCAACTTCAGTAAGCCACTGGGACTTTACAGTAGGAACAAGATGAACTTAAGCAAATGA 1206 0.4619 MPISFRSCNHQISKQKTKMGTSRSSTPTILIVFFTALAVSSALDMSIISYDRTTHADKTERRSDEEVRSIYEEWLVKHGKVPSTLALKEKRFQIFKDNLKFIDDHNAENRTYKVGLNRFADLRNDEYRSKYLRTKINPLRMMAKPSNRYAPRVDDNLPESVDWRKEGAVVRVKDQAECEGCWAFSAIAAVEGINKIVTGNLTALSEQELLDCDRTVNAGCSGGLVDYAFEFIINNAGIDTEDDYPFQGADAICDQNKQNAKAVTIDGYERVPAYDELALKKAVANQPVSVAIEAYGREFQLYESGIFRGACGTLIDHGVAAVGYGAENGTEYWIVKNSWGEKWGEEGYVRMERNIAEDSAGKCGIAILSFYPTKSGQNLSNPVNFSKPLGLYSRNKMNLSK 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00482 401 Pfam Papain family cysteine protease 157 372 IPR000668 GO:0006508|GO:0008234
Phco7g00482 401 CDD Peptidase_C1A 158 372 IPR039417 -
Phco7g00482 401 MobiDBLite consensus disorder prediction 1 22 - -
Phco7g00482 401 FunFam Cysteine protease 1 46 375 - -
Phco7g00482 401 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 332 351 IPR025661 -
Phco7g00482 401 PRINTS Papain cysteine protease (C1) family signature 332 338 IPR000668 GO:0006508|GO:0008234
Phco7g00482 401 PRINTS Papain cysteine protease (C1) family signature 175 190 IPR000668 GO:0006508|GO:0008234
Phco7g00482 401 PRINTS Papain cysteine protease (C1) family signature 317 327 IPR000668 GO:0006508|GO:0008234
Phco7g00482 401 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 61 366 IPR013128 GO:0008234
Phco7g00482 401 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 315 325 IPR025660 -
Phco7g00482 401 Pfam Cathepsin propeptide inhibitor domain (I29) 71 127 IPR013201 -
Phco7g00482 401 SUPERFAMILY Cysteine proteinases 63 373 IPR038765 -
Phco7g00482 401 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 175 186 IPR000169 -
Phco7g00482 401 SMART Inhibitor_I29_2 71 127 IPR013201 -
Phco7g00482 401 Gene3D Cysteine proteinases 52 375 - -
Phco7g00482 401 SMART pept_c1 157 373 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00482 Phco-Chr7 3519171 3521770 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00482 7 3519171 3521770 Phco8g01019 8 10625978 10628637 ECH
Phco7g00482 7 3519171 3521770 Phco9g00472 9 3452525 3454704 ECH
Phco7g00482 7 3519171 3521770 Phco7g00482 7 3519171 3521770 ECH
Phco2g00293 2 2367727 2371676 Phco7g00482 7 3519171 3521770 PCT