Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00462 ATGCAAGGGCAGAGAGGTACAGTTGGTCCAATGCCAGAAACCTTAGAATTTGATTGTGGCTCTACGCCAGGTAATTCGACTGTGGATCAGCAGATTTGCTGGAATAATGTGAATCCTGCAGAGAATCAAATACCTGATTATATACTTTCTCCTGGTGATATCAACTCACCTTATGTGAATTCTATTAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGGGAGCCAAGTTCCAGCAATACCCCAAATGAGATTAACAATAATGAGCAAAAACGAGAACTTGGATGGACATCAACCATTACTGGTGGTGCATTGCCTGGTGCAAGGCTAGAAGAAAGGCACCTTGAACCAACCAATACTCTTTCTCTAGACAATGATAATACAGGTCCTATGTACATGCGCAGTCCAGATTCTCGTTTGATGTCCCAGAATCTCAACCTAAATGCAGGTCTAGCAGACAGTGGAAGTGATAATAGTCAACATCTGGAGCTCCCTAACTTGCACATGTCTAGTGGGTCAGCAAATGAGTGCTTGCCATCTACTGTTGGATCTGGTTCCTTTTTGCTTCCTTCTGCAAATAATGGCTTCCTGGTCGAAGGTTCTGATGGTAGGCCAGGTTCTCGTGATACTCGACGTGTCTCTTGTAAAAGAAAGGCTGTTGAAGGAAATAATGGACAATCTTCAGATGCTGGAAGTTCTAGCTACAATCAGCATGCAGATGGTAGTGTTTGGCATGCGATTCCTACTCAGGATAATGCTGGAAGCAGTTCAAACAGAGCTGTATCCTCAGAGCAGGTAAATGCAAGACTTGGCCTGGGAATGGGGGATGAAGCATCTGAAAATGTTCCTGATTCAAACACTGCAGGAAGCTCAGAAAGCTTTCACAGGAATTTCCGGTTGCGGTTAAATCCTTCGAATCAACAAAATTCTGTTCCTCCCGCTGCATTCTCAACTGGGAGCATGATCAGGCAGTCTGGTGTTTCTTCATCCTCTCAAGCATCACAAAGGTTTCATTCTGTTGATAATTCTCTGAATTTGAGATCAGCTCCACCGATAGATAATGTGATTCCTCAAAGCCAGCCACTTGTAATCCATGTTCCTGCTTTGCCTAGGAATAGGCAATCGTTTAGATGGAATGGTGGTTCTAGCTCAAGAAATATCCATTCATCAAACCCAGTTATATGTGCCGACAGAGACCAAGAAGATGCAAGCTCAAGACGAATGTCTAGAAATATTTTAGAACATCCTGTCTTTGTACCTGCAACTGATTTAAGAAATTTGGTTCAAAATCCAACAGTTAGAGCTTCGAGTTCAAGTAGTGAAAATTTAAGTATTCCAGGAAATGTTGCTTCTTCATCACGGACTGGATCCAATCCAGCTACCAACCCTTCATCTGCCCCAAATTGGGTTTCTCGTCCTAATCCTCCACAACATCCACGGAGGCTATCTGAATATGTCCGTCGGTCCTTGTTTTCTCCTGGTTCTGATGTTATTGGAAATCCAAGCAATGCTTATTCTTCCTTGCGCTCTGGTCTTTCTACCTCTGAACCAAGGCCATTATCATCTGGAACTGGGGCAAATCTGAGATCATCTCCATGGATGGAGAGGCAAGGAGAAAGTGAATTTGGAATTCCTTATTCACTACGTACTCTGGCAGTTGCAAGTGAAGGAAGTAGTAGACTAGTATCTGAGCTCCGCAATGTGTTGGGCCTTATGCGTAGAGGTGGGAATGTGCGATTCGAGGATGTTGTGATCCTTGATCATCAGTCTTTTCTTTCTGGAATAGCTGATGTTCATGATCGACACAGAGACATGCGACTTGATGTTGATAACATGTCGTACGAGGAGTTGTTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACCGTATTGAAATTTTTGAAACAGAAAAAGCACTCGGTTGAAAAAGAAACTCAGATTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGATTATGGTGATGGAGATGATATTGGAACGCTTGATTGCGGCCATGATTTCCATAGTGACTGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCTATTTGTAAGACAACAGGCTTGGCAACATGA 2121 0.4319 MQGQRGTVGPMPETLEFDCGSTPGNSTVDQQICWNNVNPAENQIPDYILSPGDINSPYVNSINHEWQNLSGWSLGEPSSSNTPNEINNNEQKRELGWTSTITGGALPGARLEERHLEPTNTLSLDNDNTGPMYMRSPDSRLMSQNLNLNAGLADSGSDNSQHLELPNLHMSSGSANECLPSTVGSGSFLLPSANNGFLVEGSDGRPGSRDTRRVSCKRKAVEGNNGQSSDAGSSSYNQHADGSVWHAIPTQDNAGSSSNRAVSSEQVNARLGLGMGDEASENVPDSNTAGSSESFHRNFRLRLNPSNQQNSVPPAAFSTGSMIRQSGVSSSSQASQRFHSVDNSLNLRSAPPIDNVIPQSQPLVIHVPALPRNRQSFRWNGGSSSRNIHSSNPVICADRDQEDASSRRMSRNILEHPVFVPATDLRNLVQNPTVRASSSSSENLSIPGNVASSSRTGSNPATNPSSAPNWVSRPNPPQHPRRLSEYVRRSLFSPGSDVIGNPSNAYSSLRSGLSTSEPRPLSSGTGANLRSSPWMERQGESEFGIPYSLRTLAVASEGSSRLVSELRNVLGLMRRGGNVRFEDVVILDHQSFLSGIADVHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVLKFLKQKKHSVEKETQIDAEPCCVCQEDYGDGDDIGTLDCGHDFHSDCIKQWLMHKNLCPICKTTGLAT 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00462 706 ProSiteProfiles Zinc finger RING-type profile. 659 700 IPR001841 -
Phco7g00462 706 SMART ring_2 659 699 IPR001841 -
Phco7g00462 706 MobiDBLite consensus disorder prediction 303 339 - -
Phco7g00462 706 MobiDBLite consensus disorder prediction 432 481 - -
Phco7g00462 706 MobiDBLite consensus disorder prediction 149 168 - -
Phco7g00462 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 703 IPR013083 -
Phco7g00462 706 MobiDBLite consensus disorder prediction 221 240 - -
Phco7g00462 706 Pfam Ring finger domain 659 700 IPR001841 -
Phco7g00462 706 MobiDBLite consensus disorder prediction 205 219 - -
Phco7g00462 706 SUPERFAMILY RING/U-box 645 702 - -
Phco7g00462 706 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 162 704 IPR045191 GO:0061630
Phco7g00462 706 MobiDBLite consensus disorder prediction 73 98 - -
Phco7g00462 706 MobiDBLite consensus disorder prediction 198 240 - -
Phco7g00462 706 MobiDBLite consensus disorder prediction 432 469 - -
Phco7g00462 706 FunFam E3 ubiquitin-protein ligase MBR2 627 704 - -
Phco7g00462 706 MobiDBLite consensus disorder prediction 503 535 - -
Phco7g00462 706 MobiDBLite consensus disorder prediction 275 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00462 Phco-Chr7 3341472 3348087 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00462 7 3341472 3348087 Phco7g00462 7 3341472 3348087 ECH
Phco2g00273 2 2168276 2171713 Phco7g00462 7 3341472 3348087 PCT