Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g00433 | ATGCAACCAACATCGAACGGCTCTGATTCGCAAGCCACGGAGCAGAACCAGCAGACCACACCGCCGCCACCGCCGCAGCCTGTGCCCGTCCCGCCGCAGTGGCTCCCGATGCAGTACCCCGCGGCTGCCATGGTAATGCAGCACCACATGATGCCGCCTCAACATTATGCCGCGCCGCCGCCGCCACCGCAGCCCTACGTCGCCTACCACCAGTACCAGCAGCAGCTCCCGCACGTGCCGCACGCCCACCATCAGGGATCCAGCGCAGAGAACAAAACCGTATGGGTCGGCGATTTGCATCACTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCCTCCACCGGCGAGATTTCTTCCATTAAGGTGATTCGAAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCGCATGGCACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATATTGATGCCTAACACAGAGCAACCTTTCCGCTTGAACTGGGCATCATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGCATGTTGCATGAAACTTTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAACACTGGCCGATCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAACGAGAGATCTCAGGCTATGACTGAAATGAATGGTGTTTACTGCTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAAACCTCTGGCTATCAACAAGGAAATCAGTCAAATGGCACGTCCAACCAATCTGAAGCTGATTCTACGAACACAACTATATTTGTCGGAGGTCTTGACCCTAATGTTACTGCTGAAGATCTTCGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGGTGTGGTTTTGTACAATTTGCAATCAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAACTATTGGCAAACAAATGGTTCGCCTTTCGTGGGGCCGCAATCCGGCAAATAAGCAGTTTAGAGCAGATTTCGGCAGTCCTTGGAGTGGGGCGTATTACGGGGGACCTGTTTATGATGGTTATGGGTATGCTTTACCACCTCCTCATGACCCCAGTATATATGCTGCTGCTTATGGGGCATACCCTATTTATGGAGGACACCAGCAGCAAGTAAGCTGA | 1263 | 0.4917 | MQPTSNGSDSQATEQNQQTTPPPPPQPVPVPPQWLPMQYPAAAMVMQHHMMPPQHYAAPPPPPQPYVAYHQYQQQLPHVPHAHHQGSSAENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWASFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGNQSNGTSNQSEADSTNTTIFVGGLDPNVTAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFAIRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRADFGSPWSGAYYGGPVYDGYGYALPPPHDPSIYAAAYGAYPIYGGHQQQVS | 420 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g00433 | 420 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Phco7g00433 | 420 | SUPERFAMILY | RNA-binding domain, RBD | 167 | 279 | IPR035979 | GO:0003676 | |
| Phco7g00433 | 420 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Phco7g00433 | 420 | MobiDBLite | consensus disorder prediction | 261 | 292 | - | - | |
| Phco7g00433 | 420 | MobiDBLite | consensus disorder prediction | 18 | 34 | - | - | |
| Phco7g00433 | 420 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 92 | 172 | IPR000504 | GO:0003723 | |
| Phco7g00433 | 420 | CDD | RRM2_SECp43_like | 184 | 263 | - | - | |
| Phco7g00433 | 420 | CDD | RRM1_SECp43_like | 93 | 173 | - | - | |
| Phco7g00433 | 420 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 290 | 362 | IPR000504 | GO:0003723 | |
| Phco7g00433 | 420 | Gene3D | - | 275 | 392 | IPR012677 | - | |
| Phco7g00433 | 420 | Gene3D | - | 91 | 171 | IPR012677 | - | |
| Phco7g00433 | 420 | Gene3D | - | 173 | 274 | IPR012677 | - | |
| Phco7g00433 | 420 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 82 | 366 | - | - | |
| Phco7g00433 | 420 | MobiDBLite | consensus disorder prediction | 265 | 292 | - | - | |
| Phco7g00433 | 420 | SUPERFAMILY | RNA-binding domain, RBD | 279 | 390 | IPR035979 | GO:0003676 | |
| Phco7g00433 | 420 | FunFam | Polyadenylate-binding protein RBP47C isoform A | 91 | 171 | - | - | |
| Phco7g00433 | 420 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 185 | 264 | IPR000504 | GO:0003723 | |
| Phco7g00433 | 420 | FunFam | Polyadenylate-binding protein RBP47C isoform A | 184 | 260 | - | - | |
| Phco7g00433 | 420 | SMART | rrm1_1 | 186 | 260 | IPR000504 | GO:0003723 | |
| Phco7g00433 | 420 | SMART | rrm1_1 | 93 | 168 | IPR000504 | GO:0003723 | |
| Phco7g00433 | 420 | SMART | rrm1_1 | 291 | 358 | IPR000504 | GO:0003723 | |
| Phco7g00433 | 420 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 94 | 161 | IPR000504 | GO:0003723 | |
| Phco7g00433 | 420 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 292 | 353 | IPR000504 | GO:0003723 | |
| Phco7g00433 | 420 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 187 | 256 | IPR000504 | GO:0003723 | |
| Phco7g00433 | 420 | FunFam | Polyadenylate-binding protein RBP47 | 275 | 392 | - | - | |
| Phco7g00433 | 420 | SUPERFAMILY | RNA-binding domain, RBD | 60 | 173 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco7g00433 | Phco-Chr7 | 3083790 | 3088894 | Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco7g00433 | 7 | 3083790 | 3088894 | Phco7g00433 | 7 | 3083790 | 3088894 | ECH | |
| Phco2g00230 | 2 | 1786592 | 1790205 | Phco7g00433 | 7 | 3083790 | 3088894 | PCT |