Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00427 ATGGAAGCTTTCAACAGAACCTCATCCACCGCCTCTTCTTCCTCTGACTCTTCCTCTTCCGACTCCAACCACAACAACCCCCACAGAATCAAAGGCCCATGGAGCGCCGAGGAGGATCGGATCCTCACCCGCCTCGTCGACCGATACGGACCCCGGAACTGGTCCCTCATCAGCCGCTACATTAAGGGAAGGTCTGGCAAGTCCTGCCGCCTGCGCTGGTGCAACCAGCTCAGCCCCACCGTCCAGCACCGCCCCTTCTCTCCCCAAGAGGACCAGACCATCATCGCCGCCCACGCCCAGTATGGTAACAGGTGGGCCACCATTGCCCGTTTGTTACCGGGCCGAACCGATAACGCCGTTAAGAACCACTGGAACTCCACGCTCAAGCGCAGGGCCAAGGCTTTTCTTGACATTAATGTTAATAATGCCAGCAGCGAAGGAGCCACTTCTTCAGCTCCTTCTCGCTCCTTCGAGGATGACCCGTTGACCGCGTTGACTCTCGCTCCCCCCGGTATCTCTAACGCTGCCGTTGCCGAGGACCACCGGGCTTCGCCGGAGAATGCGCCGGCGGGGTTTTGGGATATGATGAGGGATGTGATCGCGAGAGAAGTGAGGGAATATGTGTCTTCCAGTTTTTCTGATAACTCGAACTTTCATTAA 660 0.5727 MEAFNRTSSTASSSSDSSSSDSNHNNPHRIKGPWSAEEDRILTRLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPTVQHRPFSPQEDQTIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRAKAFLDINVNNASSEGATSSAPSRSFEDDPLTALTLAPPGISNAAVAEDHRASPENAPAGFWDMMRDVIAREVREYVSSSFSDNSNFH 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00427 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 132 IPR017930 -
Phco7g00427 219 SMART sant 30 79 IPR001005 -
Phco7g00427 219 SMART sant 82 130 IPR001005 -
Phco7g00427 219 MobiDBLite consensus disorder prediction 1 29 - -
Phco7g00427 219 MobiDBLite consensus disorder prediction 1 34 - -
Phco7g00427 219 ProSiteProfiles Myb-like domain profile. 26 77 IPR001005 -
Phco7g00427 219 SUPERFAMILY Homeodomain-like 28 124 IPR009057 -
Phco7g00427 219 PANTHER MYB PROTEIN-RELATED 31 154 - -
Phco7g00427 219 Gene3D - 84 151 - -
Phco7g00427 219 FunFam MYB transcription factor 31 82 - -
Phco7g00427 219 Pfam Myb-like DNA-binding domain 34 93 - -
Phco7g00427 219 CDD SANT 33 75 IPR001005 -
Phco7g00427 219 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Phco7g00427 219 Gene3D - 30 82 - -
Phco7g00427 219 CDD SANT 85 128 IPR001005 -
Phco7g00427 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 81 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00427 Phco-Chr7 3027898 3028557 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco7g00427 Myb_DNA-bind_6 6.1e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00427 7 3027898 3028557 Phco7g00427 7 3027898 3028557 ECH
Phco2g00225 2 1747659 1750466 Phco7g00427 7 3027898 3028557 PCT