Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00342 ATGCTTATGGCTCTTCCGAGGCATAATAATGCGTTTCCTGAGGCCTTGGGAGCATTTCCTAGCATTGGAGTGGCTGAGGGCTCTGAGATAAGCCACCCAAGGCATTTTATGGATCTTCTAGGAGCAGCTAATGAGAGCAACCACCACCAACCTCAAGGGCTTTCCCTCTCTTTAGGCTCTCACATACTTATTCCTTCTGATGAATACAGGCATCATCAGAGACCCTTGAACCCGGGTCTCATCAACCCCAATTTCTTCATGTCTGGACAAGAGGCACGTGTGGCCTGTAATCCACCCGTGGAGCATCTTACTAGTGACTACTTTTTCAACACTAACACTGGCACTGACACTTTTGTCTCTTCTTCTTCTGCCCCTTTGAACCGGTCTCCTAATTCCACACCTTATGCTCCTCTTGAGTCTTTTGCTTCTGTCATTGGAAACTCGAGGTACCTCAAACCGGTACAGTCCCTTCTTGAAGATCTTGTTGACGTTGGTGGAAATGTGGTGGATAGAATCAATGAAAAGTATGTTGAGAAGATGTTTCACGGGAGTAGAGGAGGTGTTAGGATACTTTCCTCAGAGTTGAAGGCAGAGTTGAGGAATAATGGACCTTTATTGGCTGATAAACATGAACATCACATCAAAATTGCAAGGTTGATATCTTTGTTGGATAAGGCTGAGGGAAGGTGTGAGAAATATTATCATCAAATGGAAGAAGTGGTGTCATCCTTTGAAATGATAGCAGGTTTGGGAGCTGCCAAGTGTTACACTGCTTTGGCACTTCAAGCCATGTCAAGGCATTTTTGTAGCTTGAGAGAGGCCATATTGTCGCAAATAAATGCTGAGAAAAGAAAACTCTTTCAGGATTTACCTAAGATTAGTAGTGGCTTGTCTCAACTAAGCTTGTTTGATAGAGACATTAGACATAGTAGAATGTCTCTCCAACAACTTGGGGTGATTCAAAGCCAGCGCCAAGTTTGGAGACCCATCAGAGGGTTGCCTGAAACCTCTGTGGCAATTCTTCGTTCGTGGATTTTTGAGCATTTTCTCCACCCTTACCCTAATGATTCTGAAAAGCTAATGCTGGCATCTCAGACAGGTTTAACTAAAAACCAAGTCTCAAATTGGTTCATAAATGCTCGAGTACGGCTATGGAAACCAATGATAGAAGAAATGTACAAAGATGAGTTTGGGGAGTCTTCTGAAGACTCCAACCCCGCTGCTAACAATTGCTTGACGAGAGAAGATACCACAGATTGTGTAGAGGATTGA 1272 0.4371 MLMALPRHNNAFPEALGAFPSIGVAEGSEISHPRHFMDLLGAANESNHHQPQGLSLSLGSHILIPSDEYRHHQRPLNPGLINPNFFMSGQEARVACNPPVEHLTSDYFFNTNTGTDTFVSSSSAPLNRSPNSTPYAPLESFASVIGNSRYLKPVQSLLEDLVDVGGNVVDRINEKYVEKMFHGSRGGVRILSSELKAELRNNGPLLADKHEHHIKIARLISLLDKAEGRCEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLREAILSQINAEKRKLFQDLPKISSGLSQLSLFDRDIRHSRMSLQQLGVIQSQRQVWRPIRGLPETSVAILRSWIFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKDEFGESSEDSNPAANNCLTREDTTDCVED 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00342 423 ProSiteProfiles 'Homeobox' domain profile. 346 387 IPR001356 GO:0003677
Phco7g00342 423 MobiDBLite consensus disorder prediction 397 423 - -
Phco7g00342 423 Pfam Associated with HOX 144 275 IPR006563 -
Phco7g00342 423 SMART prehox3 139 277 IPR006563 -
Phco7g00342 423 SMART HOX_1 327 391 IPR001356 GO:0003677
Phco7g00342 423 CDD homeodomain 327 388 IPR001356 GO:0003677
Phco7g00342 423 SUPERFAMILY Homeodomain-like 333 395 IPR009057 -
Phco7g00342 423 Pfam Homeobox KN domain 344 383 IPR008422 GO:0003677|GO:0006355
Phco7g00342 423 Gene3D - 322 402 - -
Phco7g00342 423 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 61 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00342 Phco-Chr7 2433124 2434724 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phco7g00342 POX 3.5e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00342 7 2433124 2434724 Phco7g00342 7 2433124 2434724 ECH
Phco2g00123 2 1071593 1074660 Phco7g00342 7 2433124 2434724 PCT
Phco7g00342 7 2433124 2434724 Phco2g00125 2 1083242 1086183 PCT