Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00341 ATGTCTTCTGAGGTCCAATTGAGGAGGAAGTTCTGTTCTGGACAAGTGGAATTGTTGGATTCTCGTTTCGTGACCGGAAATTCTGGGGCGTTTCTAGCTAGTTCTTGCAGTTGGTTAGTGAGCTTGGGTTTGAACTTCGAGGGGATTTATAATAATATAGTCGCTACCCATTTCCCTAAAAAGCGATGCGCAGCTGATTCCATCCCGGAACACACATGCCTTCTACTGTATCTGTCTCGCCATTTCAATAACCTACGTGAAGATTTTAGAAGTGATGGATGCATGGGATCTGTGTCTTCTGGAGGCTTTCATGAGATTATAAAAAAGGAGAGTTTTTACAACCACCACCCCTCAATGTGTCTTACAGAAGTCCCCTCCAATCTGCCGGGTTACTCCAACAGTATTTTAAACTCCCAATACCTTAGGGCGGCACAAGAGTTGCTTGATGAAATAGTTAGTGTCCGAAAGGCTTTGAAGCAACCTGGAATGGAAAAAAAAGAGAACGACCGTGACATTGGATTAGATGGCTCTAAAAATTCTGATGAAAAATCTACCCAAATGTCTTCAGTACCTAATGGTGAACTATCATCTGCAGAACGGCAGAACTTGTTAGACAAGAAAACAAAGCTTTTATCCATGCTGGATGAGGTGGATAAAAGATACAGACAGTACTGCCATCAGATGCAGATTGTGGTGTCATCTTTTGACATGGTTGCTGGGTTTGGAGCAGTGGAACCATATACAGCACTTGCTCTAAGAACAATTTCTCGCCACTTTCGGTGTTTGCGTGATGCTATCAGTGGCCAAATTCAAGTGATGCAAAGGAGCCTTGGGGAGCAAGAGGGAATACCCCGTCTCCGCTATGTGGATCAGCAACTCAGACAACAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAAGCTCTGTTTCAATACTTCGTGCTTGGCTCTTCGAACATTTTCTTCATCCTTATCCCAAGGATTCCGAGAAAATTATGCTGGCTAAACAAACAGGCTTGACCAGAAACCAGGTGGCAAATTGGTTCATCAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAGGAAATGTACAACGAAGAGTTTGGAGATTTCGAGATGAACTGCAACCTTTCATCTGAGAACACGGTCAAAGGTAAGAGGGATGATGTTCAGGAGTCTAATAGCAATTTGGTAACTGTTGATAGTGTCCAACTCCAACATCAAGCCGAACTGGATAGGGGGGTCAATGCAAAAAATATGGTGATGAATTCTGGAACTGGGAAATTTCAGGGTGACCAGAACCAAAGGCTTGGCATGAATAACATTAACAGCAGCAGCAACAACAACCTTCATTCTATCTCGACAAATCCGAACGGTGGCGACGGGAGCCTAATAGGTTCTACTACTCATGCCACATATGATTTATCAGAGTTGGGTAACTTTACTGTGGGAGGCCACGTTTCGCTTGCATTGGAGTTGAGGAACTGTAAAAGTGATGGATTTTCCATGTCTGACGATGCCATCCACAAACGAGGTAATCAAACATTGGCCTCTTCCCCGGAGACTGATTTACTAGATTATCATTTCACGGATTCAGGAAAGCAACAACACAGGTTTGGCAATCCCCATTTGTTGCATGAGTTTGTCGTATGA 1686 0.4413 MSSEVQLRRKFCSGQVELLDSRFVTGNSGAFLASSCSWLVSLGLNFEGIYNNIVATHFPKKRCAADSIPEHTCLLLYLSRHFNNLREDFRSDGCMGSVSSGGFHEIIKKESFYNHHPSMCLTEVPSNLPGYSNSILNSQYLRAAQELLDEIVSVRKALKQPGMEKKENDRDIGLDGSKNSDEKSTQMSSVPNGELSSAERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGFGAVEPYTALALRTISRHFRCLRDAISGQIQVMQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLAKQTGLTRNQVANWFINARVRLWKPMVEEMYNEEFGDFEMNCNLSSENTVKGKRDDVQESNSNLVTVDSVQLQHQAELDRGVNAKNMVMNSGTGKFQGDQNQRLGMNNINSSSNNNLHSISTNPNGGDGSLIGSTTHATYDLSELGNFTVGGHVSLALELRNCKSDGFSMSDDAIHKRGNQTLASSPETDLLDYHFTDSGKQQHRFGNPHLLHEFVV 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00341 561 ProSiteProfiles 'Homeobox' domain profile. 306 369 IPR001356 GO:0003677
Phco7g00341 561 Pfam Homeobox KN domain 326 365 IPR008422 GO:0003677|GO:0006355
Phco7g00341 561 SUPERFAMILY Homeodomain-like 310 377 IPR009057 -
Phco7g00341 561 MobiDBLite consensus disorder prediction 162 178 - -
Phco7g00341 561 SMART prehox3 129 268 IPR006563 -
Phco7g00341 561 MobiDBLite consensus disorder prediction 179 199 - -
Phco7g00341 561 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 114 400 - -
Phco7g00341 561 Gene3D - 306 382 - -
Phco7g00341 561 MobiDBLite consensus disorder prediction 162 199 - -
Phco7g00341 561 Pfam Associated with HOX 135 267 IPR006563 -
Phco7g00341 561 CDD homeodomain 309 370 IPR001356 GO:0003677
Phco7g00341 561 SMART HOX_1 309 373 IPR001356 GO:0003677
Phco7g00341 561 FunFam BEL1-like homeodomain protein 9 312 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00341 Phco-Chr7 2427339 2430794 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phco7g00341 POX 1.6e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00341 7 2427339 2430794 Phco7g00341 7 2427339 2430794 ECH
Phco7g00341 7 2427339 2430794 Phco2g00123 2 1071593 1074660 PCT