LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco7g00332	ATGTCCACAATGCTAAAATCCGGCATGAAAATTGAGGAGAAAAAGCAAGTGAAGAAAACAGCACAGGCCAGCTCTAGAAAGGGGTGTATGAGAGGTAAAGGAGGTCCTGAGAATGCCACTTGCACCTACAAAGGTGTGAGACAGAGAACCTGGGGGAAATGGGTTGCTGAAATCCGTGAACCCAATCGTGGTGCAAGACTCTGGCTGGGGACATTCGAAACCTCTCATGACGCTGCTTTGGCTTATGATGCTGCAGCACGTAAGCTTTACGGCCCTGATGCCAAACTCAATTTACCAGACCTCACTGTGCCCCCAATGAAACCATCTCAGTGTCCACCACCACCTCCTGATATCAACACTCAGACTCCTGAAATGGAGAACCTGCAACAGCCTCTGATGCAAAACAACATAGACATGGCAACTTGTTCTAATTTCAATTTCAATCCTGCAGTTTCCATGGCCTCTCAGGAAGTTGGAGTTACTCCAATTTACACCAGTGATTGCATCGTGTCTCTTCCCTTAGACACCAATCCTAAGCCAATTGAAACCTACACAAAACCTGGGGGGATTGAGGGCGAGTTTTGCCCTTCTTGGGAGACAATGAACGAGAGTTTACCGGGTTTTGATGATTCTATCTGGGCTGAAGCTGCTATGTCTCTGGATTTTCCTCTAATTGCAGCAGAGAATGAGATTTACACACCGGAGAACACCTTGGCAGATGTGGATATGTGGGACCCTCAAGCTCCATGGTGCATGTTTTGTGCAGTTTTGTGCAGTGTGCATCTGTCTTCTATGTCAATAAGTACTATATCAATAGGTCTTGCTGCTTTTGTGGGGCGGGTGAGCAGCCCGATGCCCTTGGACACGTGCTCCGTCCTTGAAGTGGGAAAACACCAACCTCTATCAGCCATAGCCCAACCGGAGCAAGCCTAA	933	0.4791	MSTMLKSGMKIEEKKQVKKTAQASSRKGCMRGKGGPENATCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHDAALAYDAAARKLYGPDAKLNLPDLTVPPMKPSQCPPPPPDINTQTPEMENLQQPLMQNNIDMATCSNFNFNPAVSMASQEVGVTPIYTSDCIVSLPLDTNPKPIETYTKPGGIEGEFCPSWETMNESLPGFDDSIWAEAAMSLDFPLIAAENEIYTPENTLADVDMWDPQAPWCMFCAVLCSVHLSSMSISTISIGLAAFVGRVSSPMPLDTCSVLEVGKHQPLSAIAQPEQA	310

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco7g00332	310	PRINTS	Ethylene responsive element binding protein signature	65	81	IPR001471	GO:0003700\|GO:0006355
	Phco7g00332	310	PRINTS	Ethylene responsive element binding protein signature	43	54	IPR001471	GO:0003700\|GO:0006355
	Phco7g00332	310	CDD	AP2	41	101	IPR001471	GO:0003700\|GO:0006355
	Phco7g00332	310	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	15	184	-	-
	Phco7g00332	310	FunFam	Ethylene-responsive transcription factor 2	41	100	-	-
	Phco7g00332	310	Pfam	AP2 domain	42	91	IPR001471	GO:0003700\|GO:0006355
	Phco7g00332	310	ProSiteProfiles	AP2/ERF domain profile.	42	99	IPR001471	GO:0003700\|GO:0006355
	Phco7g00332	310	Gene3D	AP2/ERF domain	42	100	IPR036955	GO:0003700\|GO:0006355
	Phco7g00332	310	SUPERFAMILY	DNA-binding domain	42	100	IPR016177	GO:0003677
	Phco7g00332	310	SMART	rav1_2	42	105	IPR001471	GO:0003700\|GO:0006355
	Phco7g00332	310	MobiDBLite	consensus disorder prediction	1	35	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco7g00332	Phco-Chr7	2359153	2364787	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Phco7g00332		AP2	4.4e-14	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco7g00332	7	2359153	2364787	Phco7g00332	7	2359153	2364787	ECH
	Phco2g00115	2	1029366	1030184	Phco7g00332	7	2359153	2364787	PCT