Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00327 ATGGCTACTCCGTCACTCTTCTTCCTCTTCAGTCTCCTCCTTTTCTCCGCCACCTTGGTCATCGCCAATCGGATCGACAGTGAAGACGACCTACTGATCCGTCAAGTTGTGCCGGACGCGGAGGAGCACCTGCTCAACGCCGAGCACCACTTTTCCGCCTTCAAGACCAAGTTTGGCAGGACCTACGCTACGAAAGAGGAGCACGACTACCGCTTCCGCATATTCAAGAACAACTTGCTCCGAGCGAAGTCGCACCAGAAGCTGGACCCCTCCGCCGTCCACGGCGTCACGAAGTTCTCCGATCTCACTCCGGCGGAATTTAGCCGCCAGTTTCTGGGCTTGAAGCCGCTTCGTCTTCCCTCCGATGCCCAGAAGGCTCCGATTCTGCCGACCAGTGACCTCCCTAGCGATTTCGATTGGCGCGACCATGGAGCCGTTACTGGCGTAAAGAATCAAGGTTCTTGCGGATCGTGTTGGTCGTTTAGCGCCGTGGGAGCGTTGGAAGGTGCTCATTTTCTTTCGACCGGTGAGCTCGTGAGCCTTAGCGAACAACAACTCGTGGATTGTGATCATGAGTGTGACCCGGAAGAGCGTGGAGCATGTGACGCTGGTTGTGGCGGTGGATTGATGACCAATGCATTTGAGTACTCACTCAAGGCTGGTGGACTAATGCGAGAAAAGGATTATCCTTACACCGGAAGGGACCGTGGCCCCTGCAAGTTTGATAAGAGCAGTATCGCTGCTTCTGTAGCTAATTTCAGCGTTGTTTCCCTTGACGAAGAACAAATTGCTGCTAATCTGGTGAAGAATGGTCCTCTTGCAGTTGGTATCAATGCAATTTTTATGCAGACATATATTGGTGGCGTCTCATGCCCATACATCTGCGGCAAGCACCTGGATCATGGAGTTCTTCTCGTAGGCTATGGTGCTGGTGCTTATGCTCCCATTCGGTTTAAGGAAAAGCCTTTCTGGATCATAAAGAATTCATGGGGGGAGAGCTGGGGAGAAAAAGGATATTACAAGATCTGCCGAGGTCACAATGTATGTGGGGTGGACTCGATGGTCTCAACTGTAGCTGCTATACATACTTCTAGCCATTAA 1101 0.5195 MATPSLFFLFSLLLFSATLVIANRIDSEDDLLIRQVVPDAEEHLLNAEHHFSAFKTKFGRTYATKEEHDYRFRIFKNNLLRAKSHQKLDPSAVHGVTKFSDLTPAEFSRQFLGLKPLRLPSDAQKAPILPTSDLPSDFDWRDHGAVTGVKNQGSCGSCWSFSAVGALEGAHFLSTGELVSLSEQQLVDCDHECDPEERGACDAGCGGGLMTNAFEYSLKAGGLMREKDYPYTGRDRGPCKFDKSSIAASVANFSVVSLDEEQIAANLVKNGPLAVGINAIFMQTYIGGVSCPYICGKHLDHGVLLVGYGAGAYAPIRFKEKPFWIIKNSWGESWGEKGYYKICRGHNVCGVDSMVSTVAAIHTSSH 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00327 366 PRINTS Papain cysteine protease (C1) family signature 301 311 IPR000668 GO:0006508|GO:0008234
Phco7g00327 366 PRINTS Papain cysteine protease (C1) family signature 152 167 IPR000668 GO:0006508|GO:0008234
Phco7g00327 366 PRINTS Papain cysteine protease (C1) family signature 323 329 IPR000668 GO:0006508|GO:0008234
Phco7g00327 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 299 309 IPR025660 -
Phco7g00327 366 Gene3D Cysteine proteinases 26 359 - -
Phco7g00327 366 SMART pept_c1 134 359 IPR000668 GO:0006508|GO:0008234
Phco7g00327 366 Pfam Cathepsin propeptide inhibitor domain (I29) 51 107 IPR013201 -
Phco7g00327 366 SMART Inhibitor_I29_2 51 107 IPR013201 -
Phco7g00327 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 323 342 IPR025661 -
Phco7g00327 366 SUPERFAMILY Cysteine proteinases 48 358 IPR038765 -
Phco7g00327 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 152 163 IPR000169 -
Phco7g00327 366 CDD Peptidase_C1A 135 358 IPR039417 -
Phco7g00327 366 FunFam Cysteine protease RD19A 31 359 - -
Phco7g00327 366 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 47 352 IPR013128 GO:0008234
Phco7g00327 366 Pfam Papain family cysteine protease 134 357 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00327 Phco-Chr7 2319460 2320973 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00327 7 2319460 2320973 Phco7g00327 7 2319460 2320973 ECH
Phco2g00112 2 994972 1005205 Phco7g00327 7 2319460 2320973 PCT