Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00325 ATGGCCGGGTTCTTCTCTCTAGGTGGAACTAGAAGGGGAGGCCCACAGAACAAGGAAGAGGGAGAGGTGGGAAAAGGAGATAACAATAACAACAACAACGGGAATAACCTATTGTTGTTCAGGAACGAGGAGATCTACAACAAGGGGTTCGAAATATGGCCAGAATCGTATCAGCCTCAAGCTGCACCCCAGAACTTGAGCAACTACTTTGCATTTGGAGTGGGTCCTAGTCGCAGGAACTGCTCGAGCTTGAACGAGGAGGAGGTTTCACTGTGCGTGTCTGATGAGTCTACGAGATTTGGATTAACTGTCATGAGGTCCGGAGGTGCAGGAAGCAGCGGCATTAACTGTCAGGACTGTGGTAACCAAGCCAAGAAAGATTGTACACATCTCAGATGCAGGACCTGCTGTAAGACCCGAGGGTTTCCGTGTCAAACCCACGTTAAGAGCACTTGGGTCCCCGCAGCCAAACGCCGCGAACGACAACAACAACTCTCTGCGTTGCAGAACCCACAACAATTTCGCGGAGAGAATATTCCCAAACGACATCATAGAGACACTCAACTCGTCTCCGCTCCACAACCCATCGCAGGGTTAGAGCTGGGCCAGTTCCCACCTGAAGTGAGCACGTCGGCGGTGTTTCGGTGTGTTAGAGTCAGCGCAGTGGACGCTTCAGATGAACAGTGTGCGTATCAGACCTCTGTCAGCATCGGAGGGCATGTTTTCAAGGGAATTCTCTACGATCAAGGCCCTGAAAGTTCTTACACCAGTGCAGCTACTGAGGGTTCCTCCGGTGGTGATCCCCGACAGCTTGGCTTAATAACCGGCGCAGCCACAGCCACAACAACCGGTGGAAACCACCCATTTGACCCTTCACTCTACCCGGCTCCACTGAATGCTTTCATGTCTGGTACACAATTCTTCCAGCCCCCAAGGTCCTAA 942 0.5202 MAGFFSLGGTRRGGPQNKEEGEVGKGDNNNNNNGNNLLLFRNEEIYNKGFEIWPESYQPQAAPQNLSNYFAFGVGPSRRNCSSLNEEEVSLCVSDESTRFGLTVMRSGGAGSSGINCQDCGNQAKKDCTHLRCRTCCKTRGFPCQTHVKSTWVPAAKRRERQQQLSALQNPQQFRGENIPKRHHRDTQLVSAPQPIAGLELGQFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVSIGGHVFKGILYDQGPESSYTSAATEGSSGGDPRQLGLITGAATATTTGGNHPFDPSLYPAPLNAFMSGTQFFQPPRS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00325 313 MobiDBLite consensus disorder prediction 1 34 - -
Phco7g00325 313 NCBIfam putative zinc finger domain, LRP1 type 116 158 IPR006510 -
Phco7g00325 313 Pfam Domain of unknown function (DUF702) 114 252 - -
Phco7g00325 313 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 299 IPR007818 GO:0003700|GO:0006355
Phco7g00325 313 NCBIfam LRP1 C-terminal domain 203 251 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00325 Phco-Chr7 2308079 2309565 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Phco7g00325 DUF702 5.6e-61 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00325 7 2308079 2309565 Phco4g00918 4 7282139 7283771 ECH
Phco7g00325 7 2308079 2309565 Phco7g00121 7 817881 818714 ECH
Phco7g00325 7 2308079 2309565 Phco7g00325 7 2308079 2309565 ECH
Phco2g00111 2 985399 986855 Phco7g00325 7 2308079 2309565 PCT