Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00321 ATGAAGATCCAGTGCGACGTGTGTAACAAACACCAGGCTTCTTTATTCTGCACCGCCGATGAAGCCGCCCTCTGCGACGCCTGCGACCACCGTGTCCACCACGCCAACAAGCTCGCCTCCAAACACCAACGCTTCGCTCTCACCCACCCCTCTGCTAAGCATTCTCCTCTCTGTGATGTTTGCCAGGAGAGAAGAGCTTTTATGTTTTGTCAGCAAGATAGAGCGATTCTGTGCAAAGAGTGTGACGGCTCCATTCATTCTGCCAACGAACTCACCAAGAACCACACCAGGTTTCTTCTCACCGGGATCAAGTTCTCTGCTTCTCTCCTGCCTTATTCTTCTTCATTATCATCATCACCACCCAAGGAAAACCCTGTTCTCGATTCTTCACACCCACTTTCCAATCCTCCTTCAACACCCTCACCGCCTAAACCTGGGGGAAACTTGCAAACAAATCAAGAACCTGGTTTCACTGGTAGTAGCATATCAGAGTACTTGATAAACACTATCCCAGGCATGAAGTTCGAAGATTTCCTCGATTCCCATTCAACCTTTGCTTGCTCTAAGAATGGTGATGAGATGTGTTCGCTGTTTGGTGAGGGAAACATGGTTTCGTTCTCCCCTGGTGGGATCTGGGTTCCTCAAGCGCCACCTTCTTCTGCTGCATATTGGGAACAGATGAGTGAGCAGAATGGATACAAAGAGAGAAGGGAAGGAAGCATTAGATCAAGTTTAGGGGATGATAACTTCGTAGTTCCTCAGATGAATCCTCCCAGCAACGTTTCCAAGAGATCCAAGCTTCTTTGGTAG 810 0.484 MKIQCDVCNKHQASLFCTADEAALCDACDHRVHHANKLASKHQRFALTHPSAKHSPLCDVCQERRAFMFCQQDRAILCKECDGSIHSANELTKNHTRFLLTGIKFSASLLPYSSSLSSSPPKENPVLDSSHPLSNPPSTPSPPKPGGNLQTNQEPGFTGSSISEYLINTIPGMKFEDFLDSHSTFACSKNGDEMCSLFGEGNMVSFSPGGIWVPQAPPSSAAYWEQMSEQNGYKERREGSIRSSLGDDNFVVPQMNPPSNVSKRSKLLW 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00321 269 FunFam B-box zinc finger protein 21 1 98 - -
Phco7g00321 269 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Phco7g00321 269 CDD Bbox1_BBX-like 5 47 - -
Phco7g00321 269 MobiDBLite consensus disorder prediction 232 269 - -
Phco7g00321 269 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 258 - -
Phco7g00321 269 MobiDBLite consensus disorder prediction 116 134 - -
Phco7g00321 269 Pfam B-box zinc finger 56 97 IPR000315 GO:0008270
Phco7g00321 269 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Phco7g00321 269 Gene3D Classic Zinc Finger 1 96 - -
Phco7g00321 269 SMART bboxneu5 4 47 IPR000315 GO:0008270
Phco7g00321 269 SMART bboxneu5 53 100 IPR000315 GO:0008270
Phco7g00321 269 CDD Bbox1_BBX-like 57 100 - -
Phco7g00321 269 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Phco7g00321 269 MobiDBLite consensus disorder prediction 247 263 - -
Phco7g00321 269 MobiDBLite consensus disorder prediction 116 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00321 Phco-Chr7 2260811 2261918 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Phco7g00321 zf-B_box 5.8e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00321 7 2260811 2261918 Phco9g00445 9 3211710 3213839 ECH
Phco7g00321 7 2260811 2261918 Phco7g00321 7 2260811 2261918 ECH
Phco2g00109 2 960661 962529 Phco7g00321 7 2260811 2261918 PCT