Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00259 ATGGTTACTACCACTGTTGATTCATCCTCTAATCATCACTCACCTTCGGGTGCTGCCGATACCTATAACTTCCCGCGAAAAAACCTGCCATCTCCGTGGGCCCAGGTCGTTCGCGGTGCCGAATGTGAACCTAACCATCAATCACCGCCTTCTTCTTCCTCTTCCTCTTCCCTTGATTCTGTTAATTCTAACGGTCCTGCTGCTGATACCGTTGATGCCGCCGTGAAACCTGTGTGGAAGAGACCGTCTAATGGTTCCACGGAAATCGGGCCTGTAATGGGCGCAATATCTTGGCCCGCTTTATCCGAGTCCACCAAGCCCACTCCTAAATCGACATCTGACTCCATCGATGATGAATCACTCACCCCTCCTAAGGGTCCTGTTGTTTCAGACTCTCCTCAGAATCAAGCTTCTGCTAATGTGAAACCTAGTCCTGCAATAAACTATGGTATGGGTAATAGACAGAGGTCAATGAAGCGTGGAGGGGCAAATGGTAATAATGTTGGCTCTGGTCCTGTTCAGAACAACTTCTCTGGCGCTTCCCCACATCTTCCTCCACCGCCACCCTTTCCCGTGCTTCAGATTCCTCCTAGTACATTTGCACATGGGATACCTGGGGTTCCAGTTCCTTCTCCGAGAGAACCGTACAGAAACAAAAACTGGGATACCAGGCCTCCGCTTGGAGGGTTTATGCCGCCAATGAATGGGAATCGAAGTCCCTCTCGCCGGGGAAATGCTGGACATCATCCACGCGGAGATGGATCCTATCACAGCAGTTATGGCAACAGGCGCGATCAGGATCGTGGAGGTTATGCAAATACTAGAGATACTCATGTAAATCATCAGAGGATGCCTCCAAGGGGATTAATGAGGCCTCCTCCGCCTAATCCTGCTTCATTTATGGGGCCTCAGCCTATGCGACCCTTCGCAAATCCTCCTGGGTTTCCTGAATTCTATTATTTCCCAACACTTCAATTTGAACCCTTTGGGGGCATGCCGTTTTTAACACACGCACCTCCTCCTGCAATGTTCTTCCCGGTTGCAGAAACCCCTCTCACCAATACAATAGTCAACCAAATTGATTATTATTTTAGTGATGCTAATTTAGTGAGGGATGAGTATTTAAGGTCCAACATGGATGAACAGGGATGGGTTCCTATTACTTTGATTGCTAGCTTCCCACGTGTTAGAAGTTTGACAAGCGACATTAAGTTGATACTGGAATCACTGAGAGCTTCCACTGTCGTCGAAGTGCAGGGTGACAAGTTGAGGAGGCGTAGTGAGTGGACCAAGTGA 1296 0.4877 MVTTTVDSSSNHHSPSGAADTYNFPRKNLPSPWAQVVRGAECEPNHQSPPSSSSSSSLDSVNSNGPAADTVDAAVKPVWKRPSNGSTEIGPVMGAISWPALSESTKPTPKSTSDSIDDESLTPPKGPVVSDSPQNQASANVKPSPAINYGMGNRQRSMKRGGANGNNVGSGPVQNNFSGASPHLPPPPPFPVLQIPPSTFAHGIPGVPVPSPREPYRNKNWDTRPPLGGFMPPMNGNRSPSRRGNAGHHPRGDGSYHSSYGNRRDQDRGGYANTRDTHVNHQRMPPRGLMRPPPPNPASFMGPQPMRPFANPPGFPEFYYFPTLQFEPFGGMPFLTHAPPPAMFFPVAETPLTNTIVNQIDYYFSDANLVRDEYLRSNMDEQGWVPITLIASFPRVRSLTSDIKLILESLRASTVVEVQGDKLRRRSEWTK 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00259 431 CDD LAM 356 426 - -
Phco7g00259 431 MobiDBLite consensus disorder prediction 258 274 - -
Phco7g00259 431 PANTHER LUPUS LA PROTEIN-RELATED 95 431 IPR045180 -
Phco7g00259 431 ProSiteProfiles La-type HTH domain profile. 346 431 IPR006630 -
Phco7g00259 431 MobiDBLite consensus disorder prediction 101 119 - -
Phco7g00259 431 MobiDBLite consensus disorder prediction 181 195 - -
Phco7g00259 431 SMART la 350 428 IPR006630 -
Phco7g00259 431 FunFam la-related protein 1B isoform X2 342 431 - -
Phco7g00259 431 MobiDBLite consensus disorder prediction 1 292 - -
Phco7g00259 431 SUPERFAMILY "Winged helix" DNA-binding domain 343 429 IPR036390 -
Phco7g00259 431 Pfam La domain 356 411 IPR006630 -
Phco7g00259 431 MobiDBLite consensus disorder prediction 1 18 - -
Phco7g00259 431 MobiDBLite consensus disorder prediction 45 67 - -
Phco7g00259 431 MobiDBLite consensus disorder prediction 159 180 - -
Phco7g00259 431 Gene3D - 346 431 IPR036388 -
Phco7g00259 431 MobiDBLite consensus disorder prediction 127 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00259 Phco-Chr7 1797001 1800602 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00259 7 1797001 1800602 Phco7g00259 7 1797001 1800602 ECH
Phco2g00046 2 532811 536719 Phco7g00259 7 1797001 1800602 PCT