Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00121 ATGAAAAGAGGAACACAGGGCGAAGAAGAAGTAGTATCAAGGGGTTCTAAGTGCCAAGACTGTGGGAACCAAGCCAAGAAGGAATGTTCATATTCAAGGTGCAGAACTTGTTGCAAGAACAAAGGGTTTCAGTGCCAAACCCATATCAGGAGTACTTGGACTCCTGTGGATAAGAGGCGCAACACGTCACCTTCACCTCCATACAACTTTCATAGAGATATTCCTCAAAAGCACTACCAGATCAACCCCTATTCAGGTTTAGAGATGAAATTTCCTGGTGCTGCGAATTCGATGGCTATGTTCCGGTGCGTGCAGGTTCGGTCTATGGATGATGCGGTTAATGAAGTAGCGTATCAAACATCTGTGAACATTGGGGGGCATGTATTCAGTGGAATACTATATGATCAAGGTCCTGAACAAGGTTATAGTAATAAGGGTGAGAGTTCCAGTGGCCTTGTTGATGAACAGCAGAATAATAATCTTGGTCTTATGAATAATGCTTCAATCCACAGTAGAGATAGTGGTGGTGTAACTATAGCCTCTGCTGGTCACGGTGAACATCTTTTTCCTCCACCACCATATCCGTTTCCCCTTGCTTCCTTCGGACCCGGTATGCCATATTTCACATACCCAAGATCTTGA 642 0.4439 MKRGTQGEEEVVSRGSKCQDCGNQAKKECSYSRCRTCCKNKGFQCQTHIRSTWTPVDKRRNTSPSPPYNFHRDIPQKHYQINPYSGLEMKFPGAANSMAMFRCVQVRSMDDAVNEVAYQTSVNIGGHVFSGILYDQGPEQGYSNKGESSSGLVDEQQNNNLGLMNNASIHSRDSGGVTIASAGHGEHLFPPPPYPFPLASFGPGMPYFTYPRS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00121 213 NCBIfam LRP1 C-terminal domain 90 138 IPR006511 -
Phco7g00121 213 Pfam Domain of unknown function (DUF702) 15 139 - -
Phco7g00121 213 NCBIfam putative zinc finger domain, LRP1 type 17 59 IPR006510 -
Phco7g00121 213 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 10 172 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00121 Phco-Chr7 817881 818714 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Phco7g00121 DUF702 2.4e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00121 7 817881 818714 Phco7g00121 7 817881 818714 ECH
Phco7g00325 7 2308079 2309565 Phco7g00121 7 817881 818714 ECH
Phco7g00121 7 817881 818714 Phco4g00918 4 7282139 7283771 ECH