Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00120 ATGAAGATCCAGTGCGATGTGTGTGACAAAATGGAAGCCACAGTCTTCTGTCCTGCAGATGAAGCTGCTCTTTGCCGGAGCTGCGATCGCACCATTCACCACGCCAACAAGCTTGCAACCAAACACCCTCGCTTCTCTCTCATCTTCCCCACCTCCCAAGACTTCCCTCTTTGTGATATCTGCCAAGAGAAGCGTGCATATCTATTTTGCCAAGAGGACAGGGCATTGCTGTGCAGGGAATGTGACCTTCCAATCCACAGAGCGAATGAGCATACGCAGAAGCATAACAGGTTTCTTCTCACGGGTGTGAAGCTCTCGGCCACTTCTTTGGATTCTGCTTCCTCTTCCACCAATTGCACCGATACAGTCACTGCCTCTGAAGGAAAAAACGGTCGATCTAGAATCAACAGACCCAGATCAATTTCCCATGAAAATCCCACCTCTTCTTGCAAGGCTGAAGACAACGTGGGCAGCGACACTGGTTCGGTTTCAACCAGCAGCATTTCTGAGTATTTGATCGAGACAATACCCGGTTACTGTTTCGAAGAACTCCTTGATGGTTCATTTGCACCTACTAGTGGTTTCTGTAAGAAGCAGAACCATGATCATCGTTGGGCGTTTCAGGACCAAGATCTAGTTCGAGTTAGGACGTGTTTGGTTGGAGTTAAGGAAATTCCAAATGGGGGATGTTATGGTTGTGCCGTTCCTTAA 711 0.481 MKIQCDVCDKMEATVFCPADEAALCRSCDRTIHHANKLATKHPRFSLIFPTSQDFPLCDICQEKRAYLFCQEDRALLCRECDLPIHRANEHTQKHNRFLLTGVKLSATSLDSASSSTNCTDTVTASEGKNGRSRINRPRSISHENPTSSCKAEDNVGSDTGSVSTSSISEYLIETIPGYCFEELLDGSFAPTSGFCKKQNHDHRWAFQDQDLVRVRTCLVGVKEIPNGGCYGCAVP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00120 236 CDD Bbox1_BBX-like 5 47 - -
Phco7g00120 236 MobiDBLite consensus disorder prediction 111 131 - -
Phco7g00120 236 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Phco7g00120 236 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Phco7g00120 236 SUPERFAMILY B-box zinc-binding domain 50 91 - -
Phco7g00120 236 FunFam B-box zinc finger protein 21 1 98 - -
Phco7g00120 236 Gene3D Classic Zinc Finger 1 99 - -
Phco7g00120 236 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Phco7g00120 236 CDD Bbox1_BBX-like 57 100 - -
Phco7g00120 236 MobiDBLite consensus disorder prediction 140 161 - -
Phco7g00120 236 SMART bboxneu5 4 47 IPR000315 GO:0008270
Phco7g00120 236 SMART bboxneu5 53 100 IPR000315 GO:0008270
Phco7g00120 236 MobiDBLite consensus disorder prediction 111 161 - -
Phco7g00120 236 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00120 Phco-Chr7 805462 806557 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Phco7g00120 zf-B_box 1.7e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00120 7 805462 806557 Phco7g00120 7 805462 806557 ECH
Phco7g00120 7 805462 806557 Phco8g00427 8 3881695 3883435 ECH
Phco7g00120 7 805462 806557 Phco4g00894 4 7045351 7046704 ECH