Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02975 ATGGATTCCCCCTCTTCCTCTTCCTCTTCCTCCGAGTTCGCTTCCATAGCCACCGCCAATCAGACTGCGGCCCGGAGCAGCGGAGAAGGGGTGGCTGCAGAGCAGTCGCGGCGGTGGCACGACGTGTTCTGGTTAGGAATATTCTTAATACATTTGATTGGGCTGGGGTTCCTTCTAGGGGTTCTTGGTCTGAATAGATTTGAGAGAGAGAATAGACTTAACATTGACAAGTTTACCTCCCGGTTTTCTGAGAACGAATCCGGGTTGACTGAGACTTACTGGCCCCTCTATGCTGCTGCTGGTGGGGTTGGGACTGTTCTTGGATGGAGTTGGTTGTTGTTGTTGGGCTCCCAGGCAACTCAAATGATGAAGGTGTCTGTTCACATACTCACCACTTACCTTGCTGTCATCAGTGTTTTGTGTTTCTGGGCTGGCCAGATTTTCTGGGGGGTTGCTTTTGCCATTGGAGCTCTTCTGCAGTTCCTTTATGTCATATCAGTCGTAGACAGACTCCCATTTACGATGTTGATTCTGCAAAAAGCTGTGAAGTTGATTTGGAATCTTCCAGAGGTTATGAGAGTGGCATATGCTTTTATGTTTGTTGTGCTTCTATGGATGGCTTTATGGTCATTTGGAGCAGCAGGTGTTGTGGCTTCAAGCATGGGTGATGGTGGACGCTGGTGGCTTCTTGTGGTTCTCTCTGTGAGCTTGTTTTGGACAGGTGCAGTACTATGTAATACTGTGCATGTTATAGTGTCTGGGATGGTGTTTCTTGTTCTTTTTCATGGTGGTAGAGATGCAGCTTCAATTCCAGCTAACTCCTTAGTGAAATCTCTACAGTATGCTTTAACAACATCGTTTGGTAGCATTTGCTATGGTTCATTATTTACTGCAGCTATTAGGACACTACGATGGAAGATACGGGGATTTCGGTCTAAGATTGGCAATAATGAGTGTTTACTTTGCTTTGTTGATTTCCTTTTCCATCTCGTGGAGACTCTCGTTCGTTTCTTTAACAAGTATGCCTATGTTCAGATTGCTGTTTATGGTAAAAGCTTTAACCGGTCTGCTAGAGATGCATGGGAGTTACTCCAGTCGACTGGGGTTGAAGCACTTGTGGCCTATGATTGTTCTGGTGCCGTGCTTCTAATGGGTACTATTTTTGGTGGGCTGATAACTGGAACTTGCTCTGGTGTTTGGGCATGGGTTAAATGGAGTGACAGAGTTGTTATGATCGGATTCACGTGCATGCTGATGGGGATGGTATTGGTTGGAATGGCAATGGTGGTGGTGGAAAGTGCTGTTACGTCCATTTACATCTGCTATGCAGAGGACCCCTTATTGATTCAAAGATGGGACGCTGAATTTTTCAACCAAATGTCTGAGACACTTCATCAGCGACTTCAATATAGAAGTGCTCGAGCAAGGGAAGTTTTAACCCACAATCGATTGGATGACCTTGTACCCCAAACTACGCTTCCACACTTCCAGGCTGAGCCTGATGCAAACATGATAGAGGTGAGGTCAGAGCTGCAGCTTCATAGGGCTGAGCATCTTACAGTTGCAGTAGTATCCTGGAGCCTTGAGGGAGAGAAGCATGCATTCTGCAGATTGCAGATATCAGATTTCAGATATCAGATTGCAGATTGCAGAGGATCAATCATCTTAGAAACAATGCAAAGCTTCAACCCAACCGAATCAGAATCAACCTCACCACTCTATTCCCACTCTTCCTTCATTCACCGGGGGAATGACACCAACCGAAATCCCTCGCGCTTCTCTGATATTCAGCATTCTTTTCGACAGCACGATGCTGTTGATTTAAGTTCAAGTTCTGTGTTTGGTGCAAAGTCGAACAATATGGCTGTTGTTGCAAGCAACTTGCAGTGTGGGACATTCAACACGAACCTTGGAGGTGCAGAGTTTGCTTCGACGGTTGTGGGGTGCGTTGAGACAGAGTCTCAACACATGTATCAGAGAGGAAACAGTAGCGCCACCATGCCCATCGGGAACCAGTATGTTGAGAAATGGGCAGATGATAGCCAACACACTGAAGATACTTGCACGGATATCGACACCGATGATAAGAACCAATGTTTCTCCACCGTGTCTTGGGGCAATGGAGTTGGAGACGGGGCACTTGTAGTAGTGGACTCCCAGGATCAAACTAAGATTAAGGCTAAAGCTGAAGACCAGAAGACTGTACGTAGGCTAGCTCAGAATCGGGAGGCTGCAAGGAAGAGTCGGTTGAGGAAAAAGGCATACGTGCAACAGTTGGAGAGCAGTCGAGTTAGGCTTGCACAATTAGAACAAGATCTTCAACGGGCACGTCAGCAGGGTGTTCTTATTGCGAGTGGAGTCACGGGGGATCGCGGTCATTCAGTTGTTGGAAATGGCGCGTTAGCATTTGACATGGACTATGCCCGTTGGGTGGATGAACATCAACGGCTGATCAATGACCTCAGATCAGCTATAAATTCTCGAGTCGGTGATAATGAACTGCATCTTCTTGTTGATGGAGTCATGGCACATTATGATGATTTATTTAGGTTGAAGAGCATAGGGGCAAAGGCTGATGTATTTCACATACTTTCTGGGATGTGGAAGACTCCTGCAGAAAGATGCTTCATATGGCTTGGTGGATTTCGTTCATCTGAACTTCTCAAGATAGTTAGAAACCAGCTTGAGCCATTAACGGAAGAACAGTTGATGGGTATTTACAATCTGCAACAGTCTTCCCAGCAGGCTGAGGATGCATTATCACAAGGCATGGAAGCATTGCAGCAGTCTCTTTCAGAGACACTCTCGTCTTCCTGCCAGGGACCCTCTGGTTCTGGAAATGTTGCTGAGTACATGGGCCAAATGGCCATTGCATTGGGCAAGCTTGCCACACTCGAGAGTTTCCTTCATCAGGCTGATCTCTTGAGGCAACAAACTCTGCAGCAGATGCGTCGGATTTTAACTACCTTCCAAGCTGCGCGGGCACTCCTTGTCATAAATGATTACGTTTCACGACTCAGAGCTCTTAATTCTCTATGGTTAGCGTGCCCTAGAGAGTACTAG 3063 0.4659 MDSPSSSSSSSEFASIATANQTAARSSGEGVAAEQSRRWHDVFWLGIFLIHLIGLGFLLGVLGLNRFERENRLNIDKFTSRFSENESGLTETYWPLYAAAGGVGTVLGWSWLLLLGSQATQMMKVSVHILTTYLAVISVLCFWAGQIFWGVAFAIGALLQFLYVISVVDRLPFTMLILQKAVKLIWNLPEVMRVAYAFMFVVLLWMALWSFGAAGVVASSMGDGGRWWLLVVLSVSLFWTGAVLCNTVHVIVSGMVFLVLFHGGRDAASIPANSLVKSLQYALTTSFGSICYGSLFTAAIRTLRWKIRGFRSKIGNNECLLCFVDFLFHLVETLVRFFNKYAYVQIAVYGKSFNRSARDAWELLQSTGVEALVAYDCSGAVLLMGTIFGGLITGTCSGVWAWVKWSDRVVMIGFTCMLMGMVLVGMAMVVVESAVTSIYICYAEDPLLIQRWDAEFFNQMSETLHQRLQYRSARAREVLTHNRLDDLVPQTTLPHFQAEPDANMIEVRSELQLHRAEHLTVAVVSWSLEGEKHAFCRLQISDFRYQIADCRGSIILETMQSFNPTESESTSPLYSHSSFIHRGNDTNRNPSRFSDIQHSFRQHDAVDLSSSSVFGAKSNNMAVVASNLQCGTFNTNLGGAEFASTVVGCVETESQHMYQRGNSSATMPIGNQYVEKWADDSQHTEDTCTDIDTDDKNQCFSTVSWGNGVGDGALVVVDSQDQTKIKAKAEDQKTVRRLAQNREAARKSRLRKKAYVQQLESSRVRLAQLEQDLQRARQQGVLIASGVTGDRGHSVVGNGALAFDMDYARWVDEHQRLINDLRSAINSRVGDNELHLLVDGVMAHYDDLFRLKSIGAKADVFHILSGMWKTPAERCFIWLGGFRSSELLKIVRNQLEPLTEEQLMGIYNLQQSSQQAEDALSQGMEALQQSLSETLSSSCQGPSGSGNVAEYMGQMAIALGKLATLESFLHQADLLRQQTLQQMRRILTTFQAARALLVINDYVSRLRALNSLWLACPREY 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02975 1020 Coils Coil 752 779 - -
Phco6g02975 1020 Pfam Seed dormancy control 818 892 IPR025422 GO:0006351|GO:0043565
Phco6g02975 1020 SUPERFAMILY Leucine zipper domain 733 776 IPR046347 GO:0003700|GO:0006355
Phco6g02975 1020 PANTHER TRANSCRIPTION FACTOR TGA9 671 1019 - -
Phco6g02975 1020 FunFam BZIP family transcription factor 732 781 - -
Phco6g02975 1020 Gene3D - 732 781 - -
Phco6g02975 1020 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 731 775 IPR004827 GO:0003700|GO:0006355
Phco6g02975 1020 Pfam bZIP transcription factor 732 767 IPR004827 GO:0003700|GO:0006355
Phco6g02975 1020 SMART brlzneu 729 800 IPR004827 GO:0003700|GO:0006355
Phco6g02975 1020 Pfam Plasma-membrane choline transporter 152 446 IPR007603 GO:0022857|GO:0055085
Phco6g02975 1020 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 736 751 IPR004827 GO:0003700|GO:0006355
Phco6g02975 1020 ProSiteProfiles DOG1 domain profile. 800 1016 IPR025422 GO:0006351|GO:0043565
Phco6g02975 1020 CDD bZIP_HBP1b-like 733 785 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02975 Phco-Chr6 50897827 50910776 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco6g02975 Choline_transpo 3.4e-54 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02975 6 50897827 50910776 Phco6g02975 6 50897827 50910776 ECH