Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02972 ATGTTCTGTGTACTGATAACTAAATATTGGAAACTAAGCAAAATGTCCATGGGTGACGAACCACTATATCCAATAGCAGTGCTTATAGACGAGTTAAAAAATGATGACATTCAGCTGCGGTTAAACTCGATTCGCAGGCTATCAACAATTGCACGTGCACTTGGGGAGGAGCGAACCCGTCGAGAATTAATTCCATTTTTGAGTGAAAACAATGATGATGATGATGAGGTACTTCTTGCAATGGCAGAAGAGTTGGGAGTTTTCATTCCTTATGTTGGGGGAGTGGAACATGCCAGTGTGTTGCTGCCACCACTGGAGACACTTTGCACTGTTGAGGAGACCTGTGTAAGAGATAAAGCTGTGGAATCACTTTGTAGAATTGGATCTCAAATGAGGGAGAGTGATTTAGTTGAATATTTTATACCATTGGTTAAGAGATTAGCAGCAGGTGAATGGTTTACTGCCCGAGTCTCTGCATGTGGGCTATTTCATATTGCATACCCTAGTGCACCAGAAACATCAAAAACAGAGTTGAGATCAATATACAGTCAGTTATGTCAGGATGACATGCCTATGGTTAGAAGGTCGGCTGCATCAAATCTTGGTAAATTTGCTGCAACTGTTGAATATGCTCATTTGAAGGCTGATGTCATGTCAATTTTTGACGATTTAACTCAAGATGATCAAGATTCTGTCAGATTGTTGGCTGTGGAGGGCTGTGCTGCTCTTGGCAAGCTATTGGAGCCACAAGATTGTGTTGCACATATACTACCGGTTATTGTTAACTTCTCCCAGGACAAGTCTTGGCGTGTGCGTTACATGGTTGCAAATCAATTGTATGAACTTTGTGAAGCTGTAGGCCCTGAACCTACCAGAACGGAATTGGTACCTGCTTATGTGCGATTGCTCCGAGACAATGAGGCCGAAGTACGCATAGCAGCTGCTGGAAAAGTTACCAAATTTTGCCGGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTCCTTGTGTGAAGGAATTGTCATCAGATTCTTCACAGCATGTCCGCTCTGCTTTGGCTTCAGTGATAATGGGAATGGCACCAGTCTTAGGAAAGGAAGCAACAGTTGAGCAGCTTCTTCCTATTTTCCTTTCACTTTTGAAGGATGAATTCCCTGATGTGCGCCTGAACATTATCAGCAAGCTCGATCAAGTGAATCAGGTTATCGGAATCGATCTGTTATCTCAATCTTTGTTACCAGCCATTGTTGAGCTTGCTGAGGATAGGCATTGGAGGGTCCGACTTGCAATTATAGAATATATACCCTTATTGGCAAGTCAATTGGGGGTTGGGTTTTTTGATGACAAGCTTGGTGCTCTTTGCATGCAATGGTTGCAGGATAAGGTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATACCTCAGGTTTTGGAGATGAGCAGCAATTCACACTATTTGTATCGGATGACTATTCTTCGTGCTATCTCTCTGCTTGCTCCTGTAATGGGGCCTGAAATCACATGTTCAAACTTGTTACCGGTGGTTGTTGCTGCTTCAAAAGACCGAGTGCCCAACATAAAGTTCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCTGTGGTGGAGAAGACTATCCGTCCATGCCTGGTTGAGCTCAGTGAGGATCCTGATGTTGATGTGCGATTTTTCTCTAACCAAGCACTACAGGCAATTGATCATGTCATGATGTCTAGCTAG 1806 0.4308 MFCVLITKYWKLSKMSMGDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRRELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHASVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVEYFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPETSKTELRSIYSQLCQDDMPMVRRSAASNLGKFAATVEYAHLKADVMSIFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPDLSIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKEATVEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQHIIPQVLEMSSNSHYLYRMTILRAISLLAPVMGPEITCSNLLPVVVAASKDRVPNIKFNVAKVLESIFPIVDQSVVEKTIRPCLVELSEDPDVDVRFFSNQALQAIDHVMMSS 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02972 601 ProSiteProfiles HEAT repeat profile. 24 62 IPR021133 -
Phco6g02972 601 Gene3D - 16 597 IPR011989 -
Phco6g02972 601 ProSiteProfiles HEAT repeat profile. 295 333 IPR021133 -
Phco6g02972 601 Pfam HEAT repeat 256 284 IPR000357 GO:0005515
Phco6g02972 601 SUPERFAMILY ARM repeat 20 594 IPR016024 -
Phco6g02972 601 ProSiteProfiles HEAT repeat profile. 178 216 IPR021133 -
Phco6g02972 601 ProSiteProfiles HEAT repeat profile. 451 489 IPR021133 -
Phco6g02972 601 ProSiteProfiles HEAT repeat profile. 412 450 IPR021133 -
Phco6g02972 601 ProSiteProfiles HEAT repeat profile. 529 567 IPR021133 -
Phco6g02972 601 ProSiteProfiles HEAT repeat profile. 373 411 IPR021133 -
Phco6g02972 601 ProSiteProfiles HEAT repeat profile. 490 528 IPR021133 -
Phco6g02972 601 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 19 596 - -
Phco6g02972 601 Pfam HEAT repeats 375 475 - -
Phco6g02972 601 ProSiteProfiles HEAT repeat profile. 334 372 IPR021133 -
Phco6g02972 601 ProSiteProfiles HEAT repeat profile. 568 601 IPR021133 -
Phco6g02972 601 FunFam Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform 16 595 - -
Phco6g02972 601 ProSiteProfiles HEAT repeat profile. 256 294 IPR021133 -
Phco6g02972 601 ProSiteProfiles HEAT repeat profile. 217 255 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02972 Phco-Chr6 50873761 50880771 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02972 6 50873761 50880771 Phco6g02972 6 50873761 50880771 ECH