Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02969 ATGGCTACCGATGCCCGTGACTCGCGTCACAAGCATCGCCGATCATCCTCACCGGAGGACGCGGACAGATCCTCGAAGCGCCACAAGCATCGCCACCACGGACACCGCCATCGCCACCGCCACCGCCACGGCAGCAAAAAGCGCGACGAAGATATCGAATTCGATGATCGAACCATTGCTGCTGTTCCTTCTCCAACTCCGCATAGACATCTCCCGGAGGACGATGTGGAGGAAGGAGAGATCCTCGATGATGAAGCTCTCGATAGCGAGGTTGGAAAGAAAGAGACGGAATCTGATGTCGAACCTGGTGAAATCAAGGCGACTGGAGATCGAGATGTTCAATCTGATGATCAAAATTCGGGACACCTCACTATAAATTCAGAAACTAATGAGGACATCGGTGTTGATAAATTTATTAGTCCCGCAACCAATGCAGATGATGGTGTATCTCTTAATCGTTCAATTGCCGAGAGTCAAGATGGAAAGCATGCTACAGATGGTCGGGACAATGGTTATTTGAATTCTAAATCTTCCAGGGGTGATAAGTGGCGGAATGGGGAACTTGGACATTTTAAAGGGAATGAGAAACTAGAAGGTGGCTTTGATAATGAAACATTGGAGGCTAATGTTAGAAAAACATATTTCCATAGGAATTCATCATCCGAAAGTGGAGGAGACAAGGGTAGAATATCAGGAAGTTCTCCTTCTCATGGCAGATATAGAAGTCGATCAAGGTCAATTGATCATACAAGAGACAGGTCTCGTTCTCGTAGTGTCATAGATGAATATGTTCATTCCAAGAGAAGGCGCTCTGACTATGACTATGATGAGGAAAGAGTGAGGTCACGTGGAAGGGAACATGGTCATGGAAGTGTGGTAGATGATAGAAGGGAATACAACAGCGGATATCACAATCGCGAGGCCCAGGATAGAGATAGGAGTAGGGATAGAGACCTGTACAGAGAAAAGAAACAAGAAGAAACAAGCAGGGGTAAGGAGATTGAGTGGGACCGCAAAAGGGTTAAGGAACGTGAAAGGAGCCGTGAGAGGTATAGAAGGGATGTAGAAAAAGGTAGGAGCAGGGAAAGGGAGGATAGGGACAGGAGGCAAGAAAAGGAAAGAGGTAGGAGTTGGGAGACAGTGTTTGAGAGGGATATGAGAAGGGAAAAGGAAAGAGATAGAAGTAGGGACAGAACAAGAGACTCTAAGAGAGATAGAGACCTGGAGAATGAAAGGGATGATAGGAATCGAGAGAGGGATAATATTAAGGAGAGGGAAACACGAGATGATAGAGATGATAGATATAAGCACAAAGATAGAGACATTGCAAATGGTAAAGAGAGGCATGTGCGTCATGAAGATGGTAATGACAATGGTGATAGATATAGAAAACATTCGAGACATGAAGAAAATGATTACCATTGGGATAGAAAAAAAAATTATGGTAATCCAGTAAAGGTTTATAACTCGAGGGGAAGTACTGCAGAAGTGGATGGAAGCAAACTAATAGGTGAGGTTGAACCAGATGACTTAGAGGAGGATACATTTTTATCTGAGCAAGAAGAGGAAGATCTCAACAGGATCAAAGAAGAGAGTAGAAGAAGGAGGGAAGCAATAATGGAGAAATACAAGAGGCAGCATCAGGAAGTAGAAGTTGTTGGAAATGAACGAAATGACAAGGATACAGACACTCCAACTGAAATCTCTGAAGCGCATGATGGTAAGAATGATGATGCTGATTATGTGGAGCCATCATTTGCTGTTGGGAAATCTCCTGAAAATGTGAATGCTGCTTCTCAGAAGATATCTCTTGCTGGAGGCCTGGGAGAGGGTACTCCAAAGAGTGAAAGGTCAGAGGACAAGTATTGTGATGATATATTTGGGGAGACACCAACTGGAGTTCGAAGATCAGGAAAAGGAGATGGTTTAATGATTGAAAGGGTTGGCCTACATGACAATTGGGATGATGCAGAGGGTTATTACAGCTACCGCATTGGTGAAATACTTGATGGCCGATATGAAGTCACTGCTGCACATGGGAGGGGTGTCTTTTCAACAGTTGTTCGGGCAAAGAATCTAAAGTTGGGAAATGGTGAGCCAGAGGAAGTAGCAATAAAAATAATTCGTAATAATGACACCATGTACAAGGCTGGTATGGATGAATTGGTCATATTGAAGAAACTAGTAGGTGCAGATCCAGATGATAAACGTCATTGTGTTCGTTTCCTTTCAAGTTTTAGATACAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTAATATGAATCTCCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATTGCCTTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCCGATAATATGTTGGTAAACGAGGCTAAAAATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGGGCCCCAGAAATAATACTTGGCTTATCATATGATCATCCGTTGGATATTTGGTCTGTGGGCTGTTGCTTGTATGAGTTATATGTAGGTAAGGTTCTTTTCCCTGGGCTTACTAACAATGACATGCTACGACTTCACATGGAACTGAAGGGCCCTTTTCCAAAGAAGATGCTACGTAAGGGAGCATTTACTGAACAACATTTTGATCAGGACCTGAATTTTCTTGCAACTGAGGAAGATCCTGTGACAAAAAAGGCCATAAAGCGGCTGATTCTCAACATAAAGCCAAAAGATATTGGGACACTCATCACTGGCTCTCCCGGGGAGGATCCGAAGATGTTAGCCAACTTTAAGGATCTTCTGGAAAAAGTTTTTGTCTTGGATCCAGACAAGAGGTTGACAGTGTCACAAGCTCTAAACCACCCATTCATCACTGGCAAGTGA 2976 0.4311 MATDARDSRHKHRRSSSPEDADRSSKRHKHRHHGHRHRHRHRHGSKKRDEDIEFDDRTIAAVPSPTPHRHLPEDDVEEGEILDDEALDSEVGKKETESDVEPGEIKATGDRDVQSDDQNSGHLTINSETNEDIGVDKFISPATNADDGVSLNRSIAESQDGKHATDGRDNGYLNSKSSRGDKWRNGELGHFKGNEKLEGGFDNETLEANVRKTYFHRNSSSESGGDKGRISGSSPSHGRYRSRSRSIDHTRDRSRSRSVIDEYVHSKRRRSDYDYDEERVRSRGREHGHGSVVDDRREYNSGYHNREAQDRDRSRDRDLYREKKQEETSRGKEIEWDRKRVKERERSRERYRRDVEKGRSREREDRDRRQEKERGRSWETVFERDMRREKERDRSRDRTRDSKRDRDLENERDDRNRERDNIKERETRDDRDDRYKHKDRDIANGKERHVRHEDGNDNGDRYRKHSRHEENDYHWDRKKNYGNPVKVYNSRGSTAEVDGSKLIGEVEPDDLEEDTFLSEQEEEDLNRIKEESRRRREAIMEKYKRQHQEVEVVGNERNDKDTDTPTEISEAHDGKNDDADYVEPSFAVGKSPENVNAASQKISLAGGLGEGTPKSERSEDKYCDDIFGETPTGVRRSGKGDGLMIERVGLHDNWDDAEGYYSYRIGEILDGRYEVTAAHGRGVFSTVVRAKNLKLGNGEPEEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFRYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLSYDHPLDIWSVGCCLYELYVGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHFDQDLNFLATEEDPVTKKAIKRLILNIKPKDIGTLITGSPGEDPKMLANFKDLLEKVFVLDPDKRLTVSQALNHPFITGK 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02969 991 CDD STKc_PRP4 672 988 IPR044092 GO:0004674|GO:0006468|GO:0045292
Phco6g02969 991 PANTHER DUAL SPECIFICITY PROTEIN KINASE 391 989 - -
Phco6g02969 991 MobiDBLite consensus disorder prediction 241 481 - -
Phco6g02969 991 Gene3D Phosphorylase Kinase; domain 1 643 732 - -
Phco6g02969 991 SUPERFAMILY Protein kinase-like (PK-like) 660 990 IPR011009 -
Phco6g02969 991 MobiDBLite consensus disorder prediction 180 202 - -
Phco6g02969 991 MobiDBLite consensus disorder prediction 86 117 - -
Phco6g02969 991 FunFam serine/threonine-protein kinase PRP4 homolog 643 732 - -
Phco6g02969 991 Coils Coil 405 428 - -
Phco6g02969 991 Gene3D Transferase(Phosphotransferase) domain 1 733 989 - -
Phco6g02969 991 Pfam Protein kinase domain 675 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02969 991 MobiDBLite consensus disorder prediction 1 531 - -
Phco6g02969 991 MobiDBLite consensus disorder prediction 606 634 - -
Phco6g02969 991 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672|GO:0006468
Phco6g02969 991 MobiDBLite consensus disorder prediction 212 240 - -
Phco6g02969 991 ProSiteProfiles Protein kinase domain profile. 673 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02969 991 MobiDBLite consensus disorder prediction 546 579 - -
Phco6g02969 991 MobiDBLite consensus disorder prediction 26 45 - -
Phco6g02969 991 FunFam Serine/threonine-protein kinase PRP4 homolog 733 989 - -
Phco6g02969 991 MobiDBLite consensus disorder prediction 118 133 - -
Phco6g02969 991 Coils Coil 518 549 - -
Phco6g02969 991 SMART serkin_6 673 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02969 991 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02969 Phco-Chr6 50850680 50856812 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Phco6g02969 Pkinase 2.8e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02969 6 50850680 50856812 Phco6g02969 6 50850680 50856812 ECH