Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02955 ATGCCCGAGTCTCGGAAACAACCGGCTTCTAAACCGAAGCAGAAGCCTTGCCACTCCCTGCAAGAGTCCAAATCGATGAGAAAACTTCGTATAATTTACAACGATCCTGATGCCACTGATTCATCCGATGATGAGTCAGAGAGGATGCAGAAACCCAAAAAAACAAAGAGAAGCCTTTGTGAGATCCCTCTTCCCCCTCTTCCTCAAGCTTTCACCTCTCCCGAAACCACTTCCTTCGAGGTGAATAGCAACATCAATGCAGTGAGGGTGAAGGTTTGCATTGAAGGTCAACCCCAGAGTAAGAAGAGGGTTTTGACCCAAACCCCATCAACGAGGAGGAGCACATCTGGAAAATACAGAGGTGTTAGACAGAGAAAATGGGGTAAATGGGCTGCTGAGATTCGTGACCCTTTTCAGAGTACCCGCATATGGCTTGGTACTTTCAACACTGCGGAAGAGGCCTCTCAAGCCTACGAGGCCAGACGGCTTGAGTTTGAAGCCATGGCTAAGGCTCGATCCTACAAAAATGTTTCTGAGCCTTTGCCCACAACTTCTGATAAGAGTATATGCTGTAACTCTTCTGATGCTGCGGCTGCCGCGTCCGTGTCCGAGAAGTTTTCTACTACCTCTGAAGACTCAGATAGTGTGTTGTCACATCCATCACCTTCTTCTGTGCTTGAGTTGGATTCTTCAGCTTCCAAACCCATTGACAAGGGTAATCTTTCAAGTGAAGAAGCTGTTGAGGCTAATGATTTGGTTGCTGAACTTGCTGAACTGGAAATTCCAGATTTGAGTCTTTTAAACTTGCCATCACCATTCGACCGTGCTACTGCTGCTCTTCCGTCTGGGACTGAGCCAGACTTTGGACTTGATTTTGATTGGGTATCATTTGAGGATTATGGTCAAGGTTTTGATGATTTTGGTGGCTTGGAAGATATTCACATTTATGGGTTTGATAACAATGAGCCTAGTGAGCTTCCTGATTTCGATTTTGGCGATTTCTGTGCTGATGAGTTTGCTGGTTGGACCGAGGAGCCCCTCAACATACCTTGTGCCTAA 1059 0.4636 MPESRKQPASKPKQKPCHSLQESKSMRKLRIIYNDPDATDSSDDESERMQKPKKTKRSLCEIPLPPLPQAFTSPETTSFEVNSNINAVRVKVCIEGQPQSKKRVLTQTPSTRRSTSGKYRGVRQRKWGKWAAEIRDPFQSTRIWLGTFNTAEEASQAYEARRLEFEAMAKARSYKNVSEPLPTTSDKSICCNSSDAAAAASVSEKFSTTSEDSDSVLSHPSPSSVLELDSSASKPIDKGNLSSEEAVEANDLVAELAELEIPDLSLLNLPSPFDRATAALPSGTEPDFGLDFDWVSFEDYGQGFDDFGGLEDIHIYGFDNNEPSELPDFDFGDFCADEFAGWTEEPLNIPCA 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02955 352 MobiDBLite consensus disorder prediction 43 58 - -
Phco6g02955 352 MobiDBLite consensus disorder prediction 101 117 - -
Phco6g02955 352 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 241 - -
Phco6g02955 352 MobiDBLite consensus disorder prediction 209 242 - -
Phco6g02955 352 MobiDBLite consensus disorder prediction 101 120 - -
Phco6g02955 352 MobiDBLite consensus disorder prediction 1 73 - -
Phco6g02955 352 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Phco6g02955 352 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Phco6g02955 352 SUPERFAMILY DNA-binding domain 118 165 IPR016177 GO:0003677
Phco6g02955 352 MobiDBLite consensus disorder prediction 209 238 - -
Phco6g02955 352 Gene3D AP2/ERF domain 117 173 IPR036955 GO:0003700|GO:0006355
Phco6g02955 352 CDD AP2 118 165 IPR001471 GO:0003700|GO:0006355
Phco6g02955 352 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Phco6g02955 352 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Phco6g02955 352 PIRSF PTI6 290 339 IPR017392 GO:0003700
Phco6g02955 352 PIRSF PTI6 4 267 IPR017392 GO:0003700
Phco6g02955 352 MobiDBLite consensus disorder prediction 17 34 - -
Phco6g02955 352 ProSiteProfiles AP2/ERF domain profile. 118 178 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02955 Phco-Chr6 50742268 50743326 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Phco6g02955 AP2 1.1e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02955 6 50742268 50743326 Phco6g02955 6 50742268 50743326 ECH