Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02953 ATGAGTGCAGCTAAGAACACAGCAAACGCTGTTGGGGGCAAAACGGCAAGAGCATGCGATAGCTGTATAACGAAACGGGCACGTTGGTACTGTGCTGCCGACGATGCCTTTCTCTGCCAAGCTTGTGACTCTTCGGTTCACTCCGCCAATCCCTTGGCTCGCAGACACGAACGAGTCCGCTTGAAAACGGCGTCGTACAAGTCCACCGACGAACAACAACAACAACAACCTCCCACGTGGCACACTAAGAAAGCTCGAACGCCCAGACATGGGAAACACTCTCGTAGCAACAACCCCTTCCATCTGGTGCCTGAAGTGGGTTCGGAAGAGGTGAATTCCAATGAAGAGAACGAGGAGCAGCTTCTTTATAGGGTTCCCATATTCGACCCTTTTCTTGCTGAGCTATGCGGGACTAATAGTTCTTCTCCTTCTTCGGTGACTTCAACCGATCAAGGAGTAGCAGCTGCTGTGGCCGAGGCTGAAAACAAGGGGGTTCAGAGCAATTCTTTTTATCACAGTAATAATGAGATGGAAAACTTGCATGGGATGCTTCCTTCGGATGCAGAACTTGCTGAGTTTGCTGCTGATGTTGAGAGTTTATTGGGTAGGGGGCTTGAAAACGAGTGCGTGGGGATGGAGGATTTGGGACTCACTGATGCGAAGGAGGAGGAGTGTTCGGAGGGTAGTGGGAAGGTGAAGGTGGAAGAAGAGAGCCCTGAGATGGAGATGGAGATGGAAATGGAGATGGTGGGAAGAGATGTATCATTTGAGTTGAGCTTTGATTATGAGACGTGTGAAGAGGTGAAGGAGAATGTTTGTGATTTGGAATTTGGTAAGGAGAAGGAGAATGAAGAAGAAATGGGAGAGAAAGATGAGGTGAAAAAGAAAAAGATATCGTTGCAGCTTGATTACGAGTCCGTGATTATCGCTTGGGCTAGCCAAAAGTCTCCCTGGACCACTCCTCACAAGCCAAACTTGGACCCCGACGAGTGCTGGCACCATTGCATGGAAAGTTATGGGACGGGAATTGATGATCCTTATAGTGAAGTGGGTGGATTTGGGATTCATCCAATGATAATTGACGGAGGCAGAGAAGCGAGAGTGTCAAGGTACAGAGAAAAGCGTAGAACAAGGTTGTTCTCCAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCCAGAATGAAGGGGAGGTTTGTGAAGAGGGCTTCCTTTGCAGCACCAACATTTCCTTTGCTAAATCACTAA 1260 0.481 MSAAKNTANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERVRLKTASYKSTDEQQQQQPPTWHTKKARTPRHGKHSRSNNPFHLVPEVGSEEVNSNEENEEQLLYRVPIFDPFLAELCGTNSSSPSSVTSTDQGVAAAVAEAENKGVQSNSFYHSNNEMENLHGMLPSDAELAEFAADVESLLGRGLENECVGMEDLGLTDAKEEECSEGSGKVKVEEESPEMEMEMEMEMVGRDVSFELSFDYETCEEVKENVCDLEFGKEKENEEEMGEKDEVKKKKISLQLDYESVIIAWASQKSPWTTPHKPNLDPDECWHHCMESYGTGIDDPYSEVGGFGIHPMIIDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAPTFPLLNH 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02953 419 Pfam CCT motif 364 406 IPR010402 GO:0005515
Phco6g02953 419 ProSiteProfiles CCT domain profile. 364 406 IPR010402 GO:0005515
Phco6g02953 419 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Phco6g02953 419 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Phco6g02953 419 SMART bboxneu5 14 61 IPR000315 GO:0008270
Phco6g02953 419 MobiDBLite consensus disorder prediction 66 82 - -
Phco6g02953 419 CDD Bbox1_BBX-like 18 61 - -
Phco6g02953 419 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 8 408 - -
Phco6g02953 419 MobiDBLite consensus disorder prediction 65 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02953 Phco-Chr6 50688295 50689784 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Phco6g02953 zf-B_box 8.6e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02953 6 50688295 50689784 Phco6g02953 6 50688295 50689784 ECH