Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02936 ATGACACCTCCGCCCATCCTGCTAATTTCTTACACACCCTTCTATATCTTCACCACTACCTTTTCTGTCGTCGCAGTCACAGCCAAAACCCTAAAGTCTCTCACACTTTCGTCGGAATACGATTTTGGCTTTTTCCGTTACAATATGCCGGCGAAGGATGGCGGCTCCGACAAGGAGAAGTGCCTCGATCTCTTTCTGAAGATCGGTTTAGACGAGCGCACAGCTCGAAACACTGTCGCCAACAACAAAGTCACCGCCAATCTCACTTCTGTAATCAACGAGGCTGGTGTTACTGATGGATGCAGTCGAACGGTTGGAAATCTTCTTTATACGGTTGCGACGAAGTACCCTGCAAATGCCTTGCCGCATCGTCCAACATTACTACAATACATTGTTTCTTCGAAGGTCAAAACAACTGCACAGTTAGATGCAGCCTTATCATTTCTTGCTACTACGGGCTTGGAGAATCTTGATTCGAAAACATTTGAAGAAGCTTGTGGTGTTGGCGTTGAGGTTTCAACAGAAGATATCAAACAAGCTGTCAGTGAAGTTGTTGAGGAGAACAAGTCTACAATTTTGGAGCTACGTTATCGAACAAATGTGGGTGAGTTGCTTGGGCATGTGCGCAAGAGGCTGCCATGGGGTGACGCCAAAGTTGCCAAGCAACTTGTTGATGCAAAACTATATGAACTACTGGGCGATCGAACAGCAGCAGATGATGAAAAGCCATCTAAAAAGAAGAAGGAGAAACCTGCTAAAGTAGAGGATAAAGCACCTGTTGCCACTCCTGAAAAGTCACCTGAAGAAGATATTAATCCATATTTAATATTTCCTAACCCAGTGGAAAATTTCAAGGTGCATACTGAGGTGCCTTTTAGTGATGGTAGTATTTTGAGATGTTGTAATACAAGGGCGCTTCTTGACAAACACTTGAAAGCAACAGGTGGAAAAGTTTTGACTCGCTTTCCACCCGAACCAAATGGATATTTGCATATTGGTCATGCAAAAGCTATGTTTATTGATTTTGGGTTGGCAAAAGACAGGGATGGAGGTTGTTATCTGAGGTATGATGATACAAATCCTGAAGCAGAAAAGAAAGAGTATATTGATCACATTGAAGAAATTGTCCAGTGGATGGGTTGGAAACCATTCAAGATTACTTACACAAGTGATTACTTCCAAGAATTGTATGAATTAGCTGTGGAGCTCATAAAAAAGGGTCATGCGTATGTTGACCATCAGACACCTGATGAGATAAAGGAATATAGGGAGAAGAAAATGAACAGTCCTTGGAGAGACAGACCAATTTCAGAGTCATTGAAGCTCTTTGAGGATATGAAAAATGGCCTTGTAGAAGAAGGAAAGGCCACACTTAGAATGAAGCAAGACATGCAGAGTGATAATTACAATATGTATGACCTTATTGCTTACAGAATTAAGTTTACTCCACACCCTCATGCCGGAGACAAATGGTGTATTTATCCAAGTTATGACTATGCTCACTGTATTGTTGATTCTCTAGAGAATATCACACATTCACTGTGTACACTTGAATTTGAGACACGTCGAGCATCGTATTATTGGTTGTTGCATGCATTAGGCATTTACCAGCCTTATGTATGGGAATATTCAAGGTTGAATGTCTCTAACACAGTTATGTCAAAGCGTAAGCTGAATCGTCTAGTTACAGAGAAGTGGGTTGATGGATGGGATGATCCTCGTTTGATGACACTAGCTGGTTTGCGGCGAAGAGGCATGAGCCCCACTGCAATCAATGCTTTTGTCCGAGGAATCGGAATAACTAGAAGTGATGGTACTTTGATTTCTATTGAACGCCTTGAATACCATGTTAGGGAAGAATTAAACAGAACAGCTCCTCGAGCAATGGTTGTCCTTCATCCCCTCAAGGTTGTTATTACTAATCTTGAAACCAACCCAGTTATTGAGGTTGATGCAAAGATATGGCCTGATGCAAAAGCTGATGATGCTTCTGCTTTCTACAAGATTCCATTTTCCAATGTTGTATATATTGAACACTCAGACTTCCGGATGCAAGATTCGAAAGATTATTATGGTCTAGCTCCTGGGAAATCTGCGATACTCAGATATGCATTTCCTATAAAGTGCACTGAAGTGATTCTAGCTGATGATAATGAGACTATTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACAAAGCCTAAGGGGGTTCTCCATTGGGTTCCTCAACCTTCTCCTGGAGTTGATCCATTAAAGGTGGAAGTCAGGTTGTTTGAGAGGCTATTCCTATCAGAGAATCCCGCTGAACTTGACAATTGGCTCGGCGATTTAAACCCTAATTCCAAAGTGATAATCCCGGATGCTTACGGTGTGTCCTCCCTGCGGAATGCGAAAGTTGGGGACAATTTCCAATTTGAACGATTAGGCTACTTCGTAGTTGACCGGGACTCAACTCCAGAAAAACTTGTTTTTAATAGGACTGTCACCTTAAAGGACAGCTATAGCAAAGGTGGAAAATAG 2526 0.42 MTPPPILLISYTPFYIFTTTFSVVAVTAKTLKSLTLSSEYDFGFFRYNMPAKDGGSDKEKCLDLFLKIGLDERTARNTVANNKVTANLTSVINEAGVTDGCSRTVGNLLYTVATKYPANALPHRPTLLQYIVSSKVKTTAQLDAALSFLATTGLENLDSKTFEEACGVGVEVSTEDIKQAVSEVVEENKSTILELRYRTNVGELLGHVRKRLPWGDAKVAKQLVDAKLYELLGDRTAADDEKPSKKKKEKPAKVEDKAPVATPEKSPEEDINPYLIFPNPVENFKVHTEVPFSDGSILRCCNTRALLDKHLKATGGKVLTRFPPEPNGYLHIGHAKAMFIDFGLAKDRDGGCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWKPFKITYTSDYFQELYELAVELIKKGHAYVDHQTPDEIKEYREKKMNSPWRDRPISESLKLFEDMKNGLVEEGKATLRMKQDMQSDNYNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLHALGIYQPYVWEYSRLNVSNTVMSKRKLNRLVTEKWVDGWDDPRLMTLAGLRRRGMSPTAINAFVRGIGITRSDGTLISIERLEYHVREELNRTAPRAMVVLHPLKVVITNLETNPVIEVDAKIWPDAKADDASAFYKIPFSNVVYIEHSDFRMQDSKDYYGLAPGKSAILRYAFPIKCTEVILADDNETILEIRAEYDPSKKTKPKGVLHWVPQPSPGVDPLKVEVRLFERLFLSENPAELDNWLGDLNPNSKVIIPDAYGVSSLRNAKVGDNFQFERLGYFVVDRDSTPEKLVFNRTVTLKDSYSKGGK 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02936 841 Gene3D HUPs 294 628 IPR014729 -
Phco6g02936 841 MobiDBLite consensus disorder prediction 238 264 - -
Phco6g02936 841 Gene3D - 55 170 IPR042558 -
Phco6g02936 841 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 625 816 IPR020059 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Phco6g02936 841 NCBIfam glutamine--tRNA ligase 318 838 IPR004514 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Phco6g02936 841 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 221 290 IPR007638 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Phco6g02936 841 PRINTS Glutamyl-tRNA synthetase signature 350 363 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Phco6g02936 841 PRINTS Glutamyl-tRNA synthetase signature 321 333 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Phco6g02936 841 PRINTS Glutamyl-tRNA synthetase signature 495 505 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Phco6g02936 841 PANTHER GLUTAMINE-TRNA LIGASE 67 835 - -
Phco6g02936 841 SUPERFAMILY Nucleotidylyl transferase 317 631 - -
Phco6g02936 841 FunFam Glutamine--tRNA ligase cytoplasmic 172 240 - -
Phco6g02936 841 Pfam tRNA synthetases class I (E and Q), catalytic domain 317 622 IPR020058 GO:0004812|GO:0005524|GO:0043039
Phco6g02936 841 FunFam Glutamine--tRNA ligase cytoplasmic 287 628 - -
Phco6g02936 841 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 60 216 IPR007639 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Phco6g02936 841 Gene3D Ribosomal Protein L25; Chain P 750 834 IPR020056 -
Phco6g02936 841 FunFam Glutamine--tRNA ligase 629 748 - -
Phco6g02936 841 Gene3D - 171 240 IPR042559 -
Phco6g02936 841 MobiDBLite consensus disorder prediction 238 268 - -
Phco6g02936 841 FunFam Glutamine--tRNA ligase cytoplasmic 749 834 - -
Phco6g02936 841 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 324 335 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco6g02936 841 FunFam Glutamine--tRNA ligase cytoplasmic 57 170 - -
Phco6g02936 841 SUPERFAMILY Ribosomal protein L25-like 625 835 IPR011035 GO:0006412
Phco6g02936 841 CDD GlnRS_core 317 627 - -
Phco6g02936 841 Gene3D Ribosomal Protein L25; Chain P 629 748 IPR020056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02936 Phco-Chr6 50464636 50476568 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02936 6 50464636 50476568 Phco6g02936 6 50464636 50476568 ECH