Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02900 ATGGATTCAAACACATCAAGCTTTCTTTTGAACTCTTCAACTTTGCACTCAGTTTTCTACCAAGATAAACAAGATGACGGCATAATTGATCTGGGTCTCAGTCTCGGAACTGTTCAGCATGAAGCTTACCATTCTTCTAGCAACTTGTATGATGATGACCTTATGGACTGGCCTCAATCTAATCTGAAGCTCAAGAACTCAAGCACAATGCATGCTAGACCTGTTCACGAAAATTTTGATGAAGAGATAGAGGGGGTCCAGAGCAACGAGAGATGGGCTTATGTGAAGGTTAACATGGATGGAGTTACTATTGGTAGGAAAATTTGTGTGCTTGATCACGGTGGATACTCAAGCTTAGCACTTCAATTAGAAGACATGTTTGGAAACCAATCCGTTTCTGGATTACGATTGTTCCAATCCAGATCAGACTACTCATTGTTCTACAAGGACAGACAAGATAATTGGAGACCTGTCGGTGATGTCCCTTGGAAGGAGTTTATAGAATGTGTAAAGAGGTTGAGGATTGCAAGAAAGAATGCAGGCATTGTTTCTTGA 555 0.409 MDSNTSSFLLNSSTLHSVFYQDKQDDGIIDLGLSLGTVQHEAYHSSSNLYDDDLMDWPQSNLKLKNSSTMHARPVHENFDEEIEGVQSNERWAYVKVNMDGVTIGRKICVLDHGGYSSLALQLEDMFGNQSVSGLRLFQSRSDYSLFYKDRQDNWRPVGDVPWKEFIECVKRLRIARKNAGIVS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02900 184 ProSiteProfiles PB1 domain profile. 92 180 IPR000270 GO:0005515
Phco6g02900 184 Pfam AUX/IAA family 64 178 IPR033389 -
Phco6g02900 184 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 52 179 IPR003311 GO:0005634|GO:0006355
Phco6g02900 184 SUPERFAMILY CAD & PB1 domains 92 175 - -
Phco6g02900 184 Gene3D - 86 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02900 Phco-Chr6 50151838 50152955 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Phco6g02900 AUX_IAA 1e-21 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02900 6 50151838 50152955 Phco6g02900 6 50151838 50152955 ECH