Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02898 ATGCAAATGCGTGGTGGTGGCGGTGAAGTGGAAGTGAAAAGGGTGTTTATTGGAGCGGGATGCAACAGAATAGTGAACAACGTTTCATGGGGTGCTTCTGGTTTCGTCTCTTTTGGAGCTCACAACGCCGTTGCTATTTTCTGCCCCAAGAGTGCTCAAATTGTGGCCACTCTTCCGGGTCACAAGTCAGTTGTGAATTGCACCCACTGGCTCCCAACTTCCAAGTTTCTTTTTAAAGCAAAACAATTGGAGCAGCATTATTTGCTTTCTGGGGATGCAGATGGTTCTATTATTTTGTGGGAACTGTCCCTTGCTGATGGGAAGTGGAGGCAAGTGTTACAACTGCCACAAATGCACAAGAAAGGTGTTACATGCATTAGTGGAATTATGGTTTCTCAAACTGAGGCAATGTTTGCATCTACTTCTTCAGATTGCACTGTTTGTGTATGGGAACTTGTATTTCCAATGACTGGTAGCGGTGACTGTAAATTGTCGTGCCTGGATTCTTTCTCTATTGGATCTAAATCTATGGTAGCCCTATCATTAGCTGAATTGCCTGGAGATGATGGGCAAATTGTCCTTGCAATGGGAGGATTGGATAACAAAATTCATCTTTATTCTGGTGGAAGGACAGGAAAGCTTGTACATGCATGTGAGCTAAAAGGGCATACAGATTGGATCCGGAGTTTGGACTTCTCATTGCCTATAAATGTGAATGGGGAAGTAAACAATATTTTTCTGGTGAGTTCATCTCAGGATAAAGGCATACGAATTTGGAAGATGGCATTAAACTGCACTATGTTGAATGGAAACGGGATGTACAAGAAAGGGGAAATAAGCTTATCATCCTATATAGAAGGTCCTGTACTTTTGGCTGGTTCATCCTCTTTTCAGATATCCTTAGAATCTCTTTTAATTGGACATGAGGATTGGGTATATTCAGTAATGTGGCAACCCCCTTTGGTTTCATCCATAGAAGGGGATACCTATTATCAACCTCAAAGTATCTTATCTGCATCTATGGACAAGACTATGATGATCTGGCAACCTGAAAAGACTTCTGGAGTCTGGATGAATGTGGTCACTGTTGGGGAACTTAGCCACTGTGCTCTGGGGTTCTATGGTGGTCATTGGAGCCCAAACGGAGATTCAATTTTAGCACATGGATATGGAGGATCTTTCCATCTTTGGAAAAAAGTTGGTAATGATAATTGGCTGCCACAAAAGGTTCCCTCCGGTCATTTTGCACCAGTGACTGATATTTCCTGGGCTAGATCTGGTGATTATATTATAACTGCCAGTCACGACCAGACAACTAGAATTTATGCTCCATGGAAAGTTGAGGCTTCTCTCCAAGATGGAGAATTTTGGCATGAAATATCTCGTCCTCAAGTTCATGGTCATGATATAAATTGTATGGCAGTTATTCATGGGAAGGGGAATCATCGTTTTGTCAGTGGCGCTGATGAAAAAGTTGCCAGAGTATTCGAAGCACCGTTATCATTTCTGAAGACATTAAATAATGCCACTCTGCAGAAGTCTTGTTCTTCTGATGATATCTTGGGAAATGTTCAGATTTTGGGTGCAAATATGTCAGCTCTTGGACTATCACAGAAACCTATCTATGTTCAAGCTGTACATGAGATCCCCGAGAGAAGTGGCATTGATGGTATTGACACCCTTGAAACTATTCCCGACGCCATTCCTACTGTTTTCACTGAACCTCCAATTGAAGATCAACTGGCTTGGCATACACTATGGCCTGAATCACACAAACTCTATGGGCATGGAAATGAGCTATTTTCTTTATGCTGTGATCATAAGGGTGAGCTAGTTGCTTCTTCATGTAAGGCCCAGTCTGCTGCTGTTGCAGAGGTATGGCTTTGGCAGGTCGGTTCATGGAAAGCAGTTGGCCGCTTGCAATCCCACACCTTAACAGTGACACAGATGGAATTCTCACATGATGACAACTATCTTTTAACTGTCTCGAGGGATCGCCAGTTCTCCGTTTTCTCAATCACAAGAACAGGGTCCGGTGAAATTAATTATAGTCTTCTTGCCAGGCAGGAGGGGCACAAGCGGATTATCTGGTCATGTTCATGGAATCCACATGGTCATGAATTCGCAACAGGCTCACGGGATAAGACAGTGAAGATCTGGGCCGTTGAAAAGGATTCATCCATCAGGCAGCTTATGACTTTGCCTCAATTTATGAGTAGTGTGACAGCGTTATCTTGGGTTGGTCTCCATCATCAAAGGGATCATGGACTTCTAGCTGTTGGAATGGAAAATGGGCAAATAGAATTGTGGAATCTGTCTTGTAACAGAGCAGATGATGGTTGCATAGCAGCACCAGGTTTGGCTGCTGCTCTTGTTGTACGTATAGATCCTTTTACATGCCATGCATCTGCTGTAAACCGTTTAGCATGGAAGAAAAATCAGGAAGATCACACGAGTATGCAACTTGCTTCTTGCGGAGCTGATAATTGTGTAAGAGTGTTTGATGTAACGGTTTAG 2517 0.4303 MQMRGGGGEVEVKRVFIGAGCNRIVNNVSWGASGFVSFGAHNAVAIFCPKSAQIVATLPGHKSVVNCTHWLPTSKFLFKAKQLEQHYLLSGDADGSIILWELSLADGKWRQVLQLPQMHKKGVTCISGIMVSQTEAMFASTSSDCTVCVWELVFPMTGSGDCKLSCLDSFSIGSKSMVALSLAELPGDDGQIVLAMGGLDNKIHLYSGGRTGKLVHACELKGHTDWIRSLDFSLPINVNGEVNNIFLVSSSQDKGIRIWKMALNCTMLNGNGMYKKGEISLSSYIEGPVLLAGSSSFQISLESLLIGHEDWVYSVMWQPPLVSSIEGDTYYQPQSILSASMDKTMMIWQPEKTSGVWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWKKVGNDNWLPQKVPSGHFAPVTDISWARSGDYIITASHDQTTRIYAPWKVEASLQDGEFWHEISRPQVHGHDINCMAVIHGKGNHRFVSGADEKVARVFEAPLSFLKTLNNATLQKSCSSDDILGNVQILGANMSALGLSQKPIYVQAVHEIPERSGIDGIDTLETIPDAIPTVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGELVASSCKAQSAAVAEVWLWQVGSWKAVGRLQSHTLTVTQMEFSHDDNYLLTVSRDRQFSVFSITRTGSGEINYSLLARQEGHKRIIWSCSWNPHGHEFATGSRDKTVKIWAVEKDSSIRQLMTLPQFMSSVTALSWVGLHHQRDHGLLAVGMENGQIELWNLSCNRADDGCIAAPGLAAALVVRIDPFTCHASAVNRLAWKKNQEDHTSMQLASCGADNCVRVFDVTV 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02898 838 SUPERFAMILY WD40 repeat-like 21 349 IPR036322 GO:0005515
Phco6g02898 838 Gene3D - 174 268 IPR015943 GO:0005515
Phco6g02898 838 Gene3D - 580 680 IPR015943 GO:0005515
Phco6g02898 838 SMART WD40_4 298 349 IPR001680 GO:0005515
Phco6g02898 838 SMART WD40_4 108 151 IPR001680 GO:0005515
Phco6g02898 838 SMART WD40_4 359 398 IPR001680 GO:0005515
Phco6g02898 838 SMART WD40_4 211 260 IPR001680 GO:0005515
Phco6g02898 838 SMART WD40_4 727 771 IPR001680 GO:0005515
Phco6g02898 838 SMART WD40_4 791 835 IPR001680 GO:0005515
Phco6g02898 838 SMART WD40_4 682 721 IPR001680 GO:0005515
Phco6g02898 838 SMART WD40_4 404 443 IPR001680 GO:0005515
Phco6g02898 838 SMART WD40_4 633 672 IPR001680 GO:0005515
Phco6g02898 838 SMART WD40_4 586 630 IPR001680 GO:0005515
Phco6g02898 838 SMART WD40_4 51 101 IPR001680 GO:0005515
Phco6g02898 838 SMART WD40_4 453 497 IPR001680 GO:0005515
Phco6g02898 838 Gene3D - 4 173 IPR015943 GO:0005515
Phco6g02898 838 Gene3D - 410 517 IPR015943 GO:0005515
Phco6g02898 838 Gene3D - 289 409 IPR015943 GO:0005515
Phco6g02898 838 PRINTS G protein beta WD-40 repeat signature 88 102 IPR020472 -
Phco6g02898 838 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Phco6g02898 838 PRINTS G protein beta WD-40 repeat signature 708 722 IPR020472 -
Phco6g02898 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 640 673 IPR001680 GO:0005515
Phco6g02898 838 SUPERFAMILY WD40 repeat-like 189 773 IPR036322 GO:0005515
Phco6g02898 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 411 442 IPR001680 GO:0005515
Phco6g02898 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 261 IPR001680 GO:0005515
Phco6g02898 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 689 730 IPR001680 GO:0005515
Phco6g02898 838 FunFam Elongator acetyltransferase complex subunit 2 368 679 - -
Phco6g02898 838 Pfam WD domain, G-beta repeat 407 442 IPR001680 GO:0005515
Phco6g02898 838 Pfam WD domain, G-beta repeat 53 100 IPR001680 GO:0005515
Phco6g02898 838 Pfam WD domain, G-beta repeat 119 150 IPR001680 GO:0005515
Phco6g02898 838 Pfam WD domain, G-beta repeat 797 835 IPR001680 GO:0005515
Phco6g02898 838 Pfam WD domain, G-beta repeat 219 260 IPR001680 GO:0005515
Phco6g02898 838 Pfam WD domain, G-beta repeat 690 720 IPR001680 GO:0005515
Phco6g02898 838 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 689 723 - -
Phco6g02898 838 PANTHER ELONGATOR COMPLEX PROTEIN 2 13 837 IPR037289 GO:0002098|GO:0033588
Phco6g02898 838 Gene3D - 681 838 IPR015943 GO:0005515
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02898 6 50131264 50135876 Phco6g02898 6 50131264 50135876 ECH