Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02883 ATGCTCTCGGTTACGCAACCTTCGTGCATTCCCAAAACCCTAAAACCCTCCGTTCCCCTTCCGTTTCCGGCCATGAAGGACCGCCGAACGCCGTCCTCCTATGGCTCCGTTTACATTCCGCCGCACCACCGTTTGCGCTCCGTCGCCAATTTCAACAACTCACCCTCTTCGGTTCGCGCCAAACCCTACGAAAACCCTACACACACCATTACTACTCTGCAACCGCCGTCGACGGAGCCAGTTCCCGATAAGGCACGTTCGCGCTTCGTTTCTGCTTATGACGACACCGTTTCGGAGGAAGGCTCCGATCGCGAATTTGAACCTCCCTCACTAGCGCGTGCTTCCAAATTTGCTTATCCGAATGCTTCGCTTAATGATAACACTGACGAGTGGAAGCGGAAGTTTACCATGCTCTTAAATGACAAGAGTAAGCAAGAGTTAATCTCGAGGGAGAGAAGGGATAGGCGTGATTTTGAGCGAATAGCAGTTGTTGCAAGCAGAATGGGGTTGTACAGCCATATGTATGCTAAGGTTGTTGTCTTCAGTAAGGTCCCACTTCCAAATTACAGATATGATTTGGACGATAGGAAGCCTCAGAGGGAGGTGAGCTTGTCTATCACCACATTTACCCGTGTTAAGGCACATTTTGAGGAATATCTTGGCCAAAAATCCAGGATGAAGAAAAGCTGTTTGGATTTGTCATCTGCAAGATCAAGTAGTAATGGCAGTATTGGCATGGATGAGGGGCTTTTTGAGCAACCTGAGCCACTAGCATCAAGTAAGGCTGTTATGGAAAAAATTGTTTGGCAGAGGAGCTTACAAATGCGTGATCAGCAGCAAGCTTGGCAGGAATCTGCTGAAGGAAGTAGAATGCTAGAATTTCGCAGAAGTCTCCCAGCTTATAAAAAGAAAGAAGAAATATTATCAGTCACATCAAGGAATCAGGTAGTTATCATTTCAGGCGAAACAGGCTGTGGCAAGACAACACAAATTCCACAATTTATTTTAGAATCTGAGATAGAATCAGTTCGTGGAGCTGCTTGTAATATCATATGCACACAGCCAAGACGCATTTCAGCCATGTCAGTTTCTGAAAGAGTGGCCTGTGAGAGGGGAGAGAAATTGGGCGAATCTGTTGGATATAAAGTTCGACTTGAGGGTATGAAAGGGAGAGATACCCATCTTCTCTTTTGCACCACAGGCATTTTATTAAGAAGATTACTAGCTGATAGAAAGTTAAAAGGCGTAACTCATGTTATTGTGGATGAAATTCATGAGCGTGGGATGAATGAAGATTTTCTGCTTATTATCCTTAAAGAACTCCTTCCCCGTCGGCCAGAACTGAAACTGATTTTGATGAGTGCTAGCCTAGACGCAAGGCTCTTTTCTTCATACTTTAATGGGGCTCCGACTATGTTTATTCCGGGCTTCACATACCCTGTTAGAACTCATTTTTTGGAGAACATTCTTGAAGTGACGGGCTACAGATTAACTCCTTATAATCAAATTGATGATTATGGTCAAGAAAAGATGTGGAAAATGAACAGACAGGTCCCAAGAAAGAGGAAAAGTCAAATTGCTACCGCCGTAGAGGATGCAATTAGAGCTGCTGATTTCAGAGATTACAGCTCACATACACAGGAGTCTTTGTCATGTTGGAATCCTGACTGTATTGGTTTTAGTCTCATAGAATATATTTTGTGCAATATATGTGAGAATGAAAGACCTGGGGCTGTTTTGGTTTTCATGACTGGATGGGATGATATAAGCTCTCTGAAAGAGAAGCTCCTGACACATACTGTCTTGGGAGATCCAAACCGTGTTCTGTTGCTTACATGTCATGGCTCAATGGCTAGCTCAGAGCAGAGATTAATATTTGAAGAACCTGAAGCTGGAGTAAGAAAAATAGTGCTTACAACAAATATTGCCGAAACCAGTATTACGATAAATGATGTTGTTTATGTTCTTGACTGCGGAAAAGCAAAAGAAACATCTTATGATGCTCTGAATAACACACCTTGTCTGCTCCCTACATGGATTTCTAAGGTTTCTTCTCAACAAAGAAGAGGAAGAGCAGGTCGGGTACAACCAGGAGAGTGTTACCTTCTCTATCCTAGATGTGTGTATGATGCATTTGCGGAATATCAGTTACCAGAAATTTTGAGAACACCTTTGCAATCCCTCTGTTTACAAATTAAAAGTTTAAGACTTGGAAGTATATCCGAGTTCTTGTCCAGGGCTTTGCAGTCTCCTGAGATACTTGCGGTACAAAATGCAATTGAATATTTAAAAATAATTGGAGCTTTGGATGAGGATGAGAATCTCACTATTCTAGGGCGCTATTTGACAATGCTTCCTATGGAACCCAAACTTGGCAAGATGCTAATATTAGGTGCTATTTTCAATTGCCTAGATCCCATTTTAACCGTTGTTGCTGGGCTTAGCGTGAGAGATCCTTTTCTAACACCATTGGATAAAAAAGATCTTGCAGAGGCTGCAAAATCTCAATTCTGTGGTGCATATAGTGACCACCTTGCACTTGTAAGGGCACATGAAGGTTGGAAAGATGCTGAAATGGACCTGGGTGGATATGAATACTGCTGGAAAAATTTTCTTTCCTCGCAATCCATGAAAGCTATTGATGCTCTTCGGAGAGAGTTCATATGCCTGCTCAAGGATACCGGATTAGTTGATAGCAACGCAGCCAGCTGCAATGCATGGAGCTCTGATGTAAATCTTATCCGAGCAGTTATTTGCTATGGTTTATATCCTGGAATTGGTTCTGTTGTGAATAATGAGAAATCATTCTCTTTGAAAACAATGGAGGATGGTCAAGTGCTCCTATATTCGAACTCAGTGAATGCTCGGGAGACTAAAATTCCATATCCATGGCTTGTTTTTAACGAGAAGATAAAAGTAAACTCCGTTTTTCTCCGTGACTCAACAGCTGTGTCTGATTCAGTGGTGCTTCTGTTTGGTGGAAGCTTGTTGAAGGGAGATGCTGATAATCACTTAAAAATGTTGGGAGGATATCTTGAGTTTTTTGTGGATCCCAGTGTTGTTGATTTGTACCAGAGTATAAGGAGAGAACTTGATGCCTTCATTCAGAGCAAACTACTTTTTCCAAGAATGGGCATACAGTGGTATCATGATCTCCTATCTGCAGTACGGCTGCTGATATCGAATGACCAATGTGAAGGTAGATTTGTATTTGGTCGCCAGGTCCTTAAACCACCAAAGAAATCTATTACGATGGCCTCACATCCAACCTTGGTTTCAAGGACCGAGAGTGGACCTGGGGGAGATAATTCTAAAAGTCAGCTCCAAACATTGCTTACCAGATCAGGATATGCAGCACCCGTCTATAGGACTAAACAATTGAAGAACAATCAGTTTCAGGCTACAGTTGAATTCAATGGAATTCAGACAATGGGTCAACCATGTAACAATAAAAAGAGTGCAGAAAAAGATGCTGCAGCTGAGGCATTACAGTGGCTGATGGGTGGAAAACAAACAGGCAGGGAGTATATCAAACACTTGTCAATGTTAATTAAGAAAAGTAAGAAGGATCACAATTAA 3579 0.4233 MLSVTQPSCIPKTLKPSVPLPFPAMKDRRTPSSYGSVYIPPHHRLRSVANFNNSPSSVRAKPYENPTHTITTLQPPSTEPVPDKARSRFVSAYDDTVSEEGSDREFEPPSLARASKFAYPNASLNDNTDEWKRKFTMLLNDKSKQELISRERRDRRDFERIAVVASRMGLYSHMYAKVVVFSKVPLPNYRYDLDDRKPQREVSLSITTFTRVKAHFEEYLGQKSRMKKSCLDLSSARSSSNGSIGMDEGLFEQPEPLASSKAVMEKIVWQRSLQMRDQQQAWQESAEGSRMLEFRRSLPAYKKKEEILSVTSRNQVVIISGETGCGKTTQIPQFILESEIESVRGAACNIICTQPRRISAMSVSERVACERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLADRKLKGVTHVIVDEIHERGMNEDFLLIILKELLPRRPELKLILMSASLDARLFSSYFNGAPTMFIPGFTYPVRTHFLENILEVTGYRLTPYNQIDDYGQEKMWKMNRQVPRKRKSQIATAVEDAIRAADFRDYSSHTQESLSCWNPDCIGFSLIEYILCNICENERPGAVLVFMTGWDDISSLKEKLLTHTVLGDPNRVLLLTCHGSMASSEQRLIFEEPEAGVRKIVLTTNIAETSITINDVVYVLDCGKAKETSYDALNNTPCLLPTWISKVSSQQRRGRAGRVQPGECYLLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGSISEFLSRALQSPEILAVQNAIEYLKIIGALDEDENLTILGRYLTMLPMEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFLTPLDKKDLAEAAKSQFCGAYSDHLALVRAHEGWKDAEMDLGGYEYCWKNFLSSQSMKAIDALRREFICLLKDTGLVDSNAASCNAWSSDVNLIRAVICYGLYPGIGSVVNNEKSFSLKTMEDGQVLLYSNSVNARETKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVVLLFGGSLLKGDADNHLKMLGGYLEFFVDPSVVDLYQSIRRELDAFIQSKLLFPRMGIQWYHDLLSAVRLLISNDQCEGRFVFGRQVLKPPKKSITMASHPTLVSRTESGPGGDNSKSQLQTLLTRSGYAAPVYRTKQLKNNQFQATVEFNGIQTMGQPCNNKKSAEKDAAAEALQWLMGGKQTGREYIKHLSMLIKKSKKDHN 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02883 1192 SMART helicmild6 587 696 IPR001650 -
Phco6g02883 1192 SUPERFAMILY dsRNA-binding domain-like 1098 1169 - -
Phco6g02883 1192 Pfam DEAD/DEAH box helicase 306 458 IPR011545 GO:0003676|GO:0005524
Phco6g02883 1192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 884 IPR027417 -
Phco6g02883 1192 FunFam Putative ATP-dependent RNA helicase DHX36 738 842 - -
Phco6g02883 1192 CDD DEXHc_RHA-like 314 474 - -
Phco6g02883 1192 Pfam Helicase associated domain (HA2) 759 832 IPR007502 GO:0004386
Phco6g02883 1192 Gene3D - 256 476 IPR027417 -
Phco6g02883 1192 Pfam Double-stranded RNA binding motif 1104 1166 IPR014720 -
Phco6g02883 1192 MobiDBLite consensus disorder prediction 57 83 - -
Phco6g02883 1192 Gene3D - 738 840 - -
Phco6g02883 1192 FunFam DExH-box ATP-dependent RNA helicase DExH3 558 714 - -
Phco6g02883 1192 SMART DRBM_3 1104 1167 IPR014720 -
Phco6g02883 1192 MobiDBLite consensus disorder prediction 57 78 - -
Phco6g02883 1192 CDD SF2_C_RHA 553 704 - -
Phco6g02883 1192 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 562 736 IPR001650 -
Phco6g02883 1192 SMART ha2_5 758 848 IPR007502 GO:0004386
Phco6g02883 1192 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 914 995 IPR011709 -
Phco6g02883 1192 SMART ultradead3 269 489 IPR014001 -
Phco6g02883 1192 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 308 475 IPR014001 -
Phco6g02883 1192 Gene3D - 1081 1171 - -
Phco6g02883 1192 FunFam DExH-box ATP-dependent RNA helicase DExH3 1082 1171 - -
Phco6g02883 1192 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1103 1168 IPR014720 -
Phco6g02883 1192 PANTHER ATP-DEPENDENT RNA HELICASE 248 998 - -
Phco6g02883 1192 FunFam DExH-box ATP-dependent RNA helicase DExH3 252 476 - -
Phco6g02883 1192 Gene3D - 561 715 IPR027417 -
Phco6g02883 1192 Pfam Helicase conserved C-terminal domain 564 695 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02883 Phco-Chr6 49942997 49954838 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02883 6 49942997 49954838 Phco6g02883 6 49942997 49954838 ECH