Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02877 ATGGAAAAGGGTCTCTTAGAGAAGGAGAGAGAGGATGAAGAGGGTAGTTCAGGCGTAATAAGATGGAGTGTATTTGGTGAAGAGGTGAAAAGGGTCGGTTATCTAGCAGGCCCTATGGTTGCTGTGACTCTGTCACAGTATTTTCTACAAATAATATCAATGATGATGGTTGGTCACTTGGGTAAGCTTGCTCTCTCCAGCACAGCCATTGCCATCTCTCTCTGTGCTGTATCTGGTTTCAGTGTCATTTTTGGAATGTCATGTGCACTGGAAACTCAATGTGGGCAAGCATATGGAGCACAGCAATACAGAAAATTTGGCGTTCAAATTTACACTGCAATTGTCTCGCTTACTTTAGCTTGTCTTCCTCTGACTCTTTTGTGGATCTACTTGGGGAAGCTGCTCATTATACTTGGCCAAGACCCTTTGATTTCACAAGAAGCTGGAAAATTTGCTTTGTGCATGATCCCTGCTCTCTTTGCTTACGCAGCACTACAGACCTTGGTTCGATACTTTTTGATGCAAAGTCTTATCAGTCCCCTTGTCATAAGTTCCTCCATTACTCTTTGCTTCCATGTGGCTTTCAGTTGGTTAATGGTTTTTAAATCTGGACTCGGTAACTTAGGAGCAGCATTTTCTATCAGTACTTCATACTGGCTAAATGTGATTTTACTTGGATTATATATGAAATTCTCTACTCAGTGTGAAAAGACTCGAGTCCCAATTTCAATGGAACTATTCCATGGGATTGGAGAATTCATCCGCTATGCCATTCCTTCAGCTGGAATGATTTGCCTTGAATGGTGGTCATTTGAGCTAATAATCTTGCTTTCTGGTTTTTTACCAAATCCAGAGCTAGAAACTTCAGTCTTATCCATATGTTTAAATATCACCACAACAATCTACACGATCGCAGAATCAATTGGCTCAGCTGCAAGCACTAGAATTTCGAATGCATTAGGAGCTGGAAATCCACAATCAGCACGAGTATGTGTTTATGCTGCCATGACTCTTGCAGCTTCCGAGGCCATTCTGGTGAGCTCAGTCATTTTTGCTTGCAGGCAGATTTTAGGTTATTTATTTAGCAATGAGCCGGACGTGGCAGGTTATGTCACAGATATGGCTCCTCTCTTAAGTCTCTCTGTTATACTGGACTCCTTACATGGTACCCTTTCAGGTATTGCTAGAGGATGTGGGTGGCAGCACTTAGGAGCATATGTAAATCTTGGAGCCTATTATGGTTTTGGAATTCCAACTGCTGCTATATTGGGTTTCTGGATTCTATTAGGAGGAAAAGGGTTGTGGATTGGAATACTGACTGGTGCCTTCTGTCAAACAGTGATGTTATCTCTCATAACAACAAGTACAAACTGGGAAGAACAGGCTATTAAAGCAAGGGAAAGAATATTTCAGAGAAGTTTTTCTGCAGACGATGGATTAGTTTAA 1446 0.4156 MEKGLLEKEREDEEGSSGVIRWSVFGEEVKRVGYLAGPMVAVTLSQYFLQIISMMMVGHLGKLALSSTAIAISLCAVSGFSVIFGMSCALETQCGQAYGAQQYRKFGVQIYTAIVSLTLACLPLTLLWIYLGKLLIILGQDPLISQEAGKFALCMIPALFAYAALQTLVRYFLMQSLISPLVISSSITLCFHVAFSWLMVFKSGLGNLGAAFSISTSYWLNVILLGLYMKFSTQCEKTRVPISMELFHGIGEFIRYAIPSAGMICLEWWSFELIILLSGFLPNPELETSVLSICLNITTTIYTIAESIGSAASTRISNALGAGNPQSARVCVYAAMTLAASEAILVSSVIFACRQILGYLFSNEPDVAGYVTDMAPLLSLSVILDSLHGTLSGIARGCGWQHLGAYVNLGAYYGFGIPTAAILGFWILLGGKGLWIGILTGAFCQTVMLSLITTSTNWEEQAIKARERIFQRSFSADDGLV 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02877 481 NCBIfam MATE family efflux transporter 38 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco6g02877 481 CDD MATE_eukaryotic 28 464 IPR045069 GO:0042910|GO:1990961
Phco6g02877 481 Pfam MatE 38 198 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco6g02877 481 Pfam MatE 259 421 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco6g02877 481 PANTHER MULTIDRUG RESISTANCE PROTEIN 22 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02877 Phco-Chr6 49884850 49887271 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02877 6 49884850 49887271 Phco6g02877 6 49884850 49887271 ECH
Phco6g02877 6 49884850 49887271 Phco5g00306 5 2556042 2559455 ECH