Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02876 ATGGAAGAGGGTGGCTCAGGCATAATAAAATGGAGAGTGTTTGGTGAAGAGGTGAAAAGGGTTGGTTACTTAGCAGGTCCAATGATTGCTGTGAATCTGTCACAGTATTCTCTACAAATAATATCAATGATGATGGTTGGTCGCTTGGGTAAGCTTGCTTTCTCCAGCACAGCCATTGCCATCTCTCTCTGTAATGTCTCTGGCTTCAGTGTCATTCTTGGAATGTCATGTGCACTGGAAACTCAGTGTGGGCAAGCATATGGAGCACAGCAATACAGAAAATTTGGTGTTCAAATTTACACTGCAATTGTCTCCCTTACTTTAGCTTGTCTTCCTCTGACTCTTTTGTGGATCTACATGGGGAAGCTGCTCATTATACTTGGCCAAGACCCTTTGATTTCACAAGAAGCTGGAAAATTTGCTTTGTGCATGATCCCTGCTCTCTTTGCTTATGCAACACTTCAGTCTTTGGTTCGATTCTTTTTTATGCAAAGTCTGATCAGTCCCCTTGTCATAAGTTCCTCCATTACTCTTTGCTTCCATGTGGCTTTCAGTTGGTTAATGGTTTTTAAATCTGGACTCGGTAACTTAGGAGCAGCTTTTTCTATCAGTACTTCATACTTGCTGAATGTGATTTTACTTGGATTATATATGAAATACTCTACTCAGTGTGAAAAGACTCGAGTCCCAATTTCAATGGAACTATTCCATGGAATTGGAGAATTCATCCGCTATGCCATTCCTTCAGCTGGAATGATTTGCCTTGAATGGTGGTCATTTGAGCTAATAATCTTGCTTTCTGGTCTTTTACCAAATCCAGAGCTAGAAACTTCAGTCTTATCCATATGTTTAAACATCACCACAACAATCTACACGATCGCAGAATCAATTGGCTCAGCTGCAAGCACTAGAATTTCGAATGCATTAGGAGCTGGAAGTTCACAATCAGCACGAGTATGTGTTTATGCTGCCATGACTCTTGCAGCTTCCGACGCCATTCTGGTGAGCTCAGTCATTTTTGCTTGCAGGCAGATTTTAGGTTATGTATTTAGCAATGAGCACGACGTGGCGGATTATGTGACAGATATGGTTCCTCTCTTAAGTCTCTCTGTTATACTGGACTCCTTATATGGTACCCTTTCAGGTATTGCTAGAGGATGTGGGTGGCAGCAGTTAGGAGCATATGTAAACCTTGGAGCCTATTATGGTTTTGGAATTCCAACTGCTGCTATATTGGGTTTCTGGATTCTACTAGGAGGAAAAGGGTTGTGGATTGGAATACTGACTGGTTCCTTCTGTCAAACAGTGATGTTATCTCTCATAACAACAAGTACAAACTGGGAAGAACAGGCAATTAAAGCAAGGGAAAGGATATTTCAGAGAAGTTTTTCTGTAGAAGGTGGATTAGTTTAA 1413 0.4119 MEEGGSGIIKWRVFGEEVKRVGYLAGPMIAVNLSQYSLQIISMMMVGRLGKLAFSSTAIAISLCNVSGFSVILGMSCALETQCGQAYGAQQYRKFGVQIYTAIVSLTLACLPLTLLWIYMGKLLIILGQDPLISQEAGKFALCMIPALFAYATLQSLVRFFFMQSLISPLVISSSITLCFHVAFSWLMVFKSGLGNLGAAFSISTSYLLNVILLGLYMKYSTQCEKTRVPISMELFHGIGEFIRYAIPSAGMICLEWWSFELIILLSGLLPNPELETSVLSICLNITTTIYTIAESIGSAASTRISNALGAGSSQSARVCVYAAMTLAASDAILVSSVIFACRQILGYVFSNEHDVADYVTDMVPLLSLSVILDSLYGTLSGIARGCGWQQLGAYVNLGAYYGFGIPTAAILGFWILLGGKGLWIGILTGSFCQTVMLSLITTSTNWEEQAIKARERIFQRSFSVEGGLV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02876 470 PANTHER MULTIDRUG RESISTANCE PROTEIN 11 447 - -
Phco6g02876 470 CDD MATE_eukaryotic 17 453 IPR045069 GO:0042910|GO:1990961
Phco6g02876 470 Pfam MatE 27 187 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco6g02876 470 Pfam MatE 248 410 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco6g02876 470 NCBIfam MATE family efflux transporter 27 424 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02876 Phco-Chr6 49879701 49882528 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02876 6 49879701 49882528 Phco6g02876 6 49879701 49882528 ECH
Phco6g02876 6 49879701 49882528 Phco5g00308 5 2570830 2573378 ECH